Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01398 ATGAAGCCCCGTTTTCTAGACACAGAGATGAGCATGCCACCATCATATGAAAACAACACAAGCGATTCATTCATCAACGTTGAGAATTTCGACACCAACATGGTGATTATATTAGCAGCACTATTATGCACATTGATACTCGCATTGGGATTGAACACCATAGCTCGATGCGCCATGAGATGCAGCAGAAGATTATCGGGAGAAACAGAGGAACAAGCAACGGCGAGGTTGAACAAAACAGGGCTGAAAAAGCGTGATTTGAGTCAGATTCCGGTGGCGGTATACGGTACCGGAGAGAATATTCCGGCGACGGAGTGTCCCATTTGTCTAGGGGAATTCGAGAAAGGAGACAAAATTCGAATGCTACCAAAATGTAATCACGGGTTTCATATTAGGTGTATTGACACGTGGTTGGTTTCGCATTCATCTTGTCCCAATTGTCGAAATTCACTTCTTGAAAAAGATTCCAACAATGTTTCTTCTTCTAGGGTTGCCGGAGATATGTTGCCGGAAAATGTTGCCGTGATTGTTGAGCAGGCAAGTTGA 546 0.4396 MKPRFLDTEMSMPPSYENNTSDSFINVENFDTNMVIILAALLCTLILALGLNTIARCAMRCSRRLSGETEEQATARLNKTGLKKRDLSQIPVAVYGTGENIPATECPICLGEFEKGDKIRMLPKCNHGFHIRCIDTWLVSHSSCPNCRNSLLEKDSNNVSSSRVAGDMLPENVAVIVEQAS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01398 181 PANTHER RING-H2 FINGER PROTEIN ATL74 2 162 - -
Car03g01398 181 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 153 IPR013083 -
Car03g01398 181 CDD RING-H2_EL5_like 105 148 - -
Car03g01398 181 SMART ring_2 106 147 IPR001841 -
Car03g01398 181 Pfam Ring finger domain 105 148 IPR001841 -
Car03g01398 181 SUPERFAMILY RING/U-box 95 154 - -
Car03g01398 181 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Car03g01398 181 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01398 Car-Chr3 59253931 59255539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01398 4 169 C3H Transcription Factor Family AT3G10910 51.429 6.24e-55 170
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01398 K19040 - gmx:100814602 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01398 03 59253931 59255539 Car03g01398 03 59253931 59255539 ECH