Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01377 ATGGGTTCAAGGGATCAACAACTTCGACAACTTCGAGATGTCACAAGCTCTAGTGCTATGAACAAAGCCTCAATTATTGTAGACGCCTCCAAATACATAAAAGTGTTGAAACAAAAAGTGGAGGGACTAAACTCAGAGTTAGGAGCAGTTGAGTCATCAACCCCTCAAATAGAGGACGACCAACCTATGGTGACTGTGAAAACCCTAGAAAAGGGTTTCCTAATTAATGTCCTTATAGAAAAGAATAGTCCTGGTATGCTGACATCAATACTTGAAGCTTTTGAAGATCTGGGACTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACACTTTCAAGCTAGAAGCTTTTGGAGGAGATAGTCACAAGGTCGACAGTATCGACGCGCAAGTGGTGAAGCAAGCTGTGTTGCAAGCTATCAAGAACACGGACTAA 435 0.423 MGSRDQQLRQLRDVTSSSAMNKASIIVDASKYIKVLKQKVEGLNSELGAVESSTPQIEDDQPMVTVKTLEKGFLINVLIEKNSPGMLTSILEAFEDLGLDVLDARVSCEDTFKLEAFGGDSHKVDSIDAQVVKQAVLQAIKNTD 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01377 144 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 5 144 - -
Car03g01377 144 Coils Coil 33 53 - -
Car03g01377 144 CDD ACT_UUR-ACR-like 81 140 - -
Car03g01377 144 ProSiteProfiles ACT domain profile. 75 144 IPR002912 -
Car03g01377 144 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 5 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01377 Car-Chr3 58986559 58989003 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01377 5 117 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G26744 28.767 1.16e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01377 - - mtr:MTR_7g072470 209.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01377 03 58986559 58989003 Car02g01756 02 46675311 46678366 ECH
Car03g01377 03 58986559 58989003 Car03g01377 03 58986559 58989003 ECH
Car03g01377 03 58986559 58989003 Car05g01352 05 57474287 57475645 ECH