Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01374 ATGGCAGATCCTGCTAGTAATGGGGGTCTTGAACGAGATATTGAACAAGCACTCTTTACTTTGAAGAAAGGAACTCAGTTAATAAAGTACAGCCGAAAAGCCAAGCCAAAAGTTTGCCCTTTCAGACTCTCCTTGGATGAAACAACACTGATTTGGATTTCTCATAAAAGGGAAAGGACACTGAAACTATCTTCAATTTCACGTATTATACCTGGACAAAGAACTGCTGTATTTAGAAGATATTTGCAACCAGAAAAGGATTATCTTTCATTTTCACTTGTTTATAATAACGGAGAGCGGACACTTGATCTGATATGCAAGGACAAAGCTGAGGCAGAGGTATGGTTTGCAGGGCTTAAAGAATTAGTTTCCACTGGAAGACATAATAGGCTTACTAGAAGTGAATTATCAAATAGTGGTATTGATTTTATTCCAAATGATCACCCTTTCGGTGTAGCATTAGAGTTTGCAACAAGCATTAACCGTGGTAGTGGTAGGGTCTCGACTGATTCAGCTTCATCGTGTGGGACAAATCCAAATGTAGGGTTAGATCATACAAATATGCAACCAAGGACAAGTATTGGAGATGGTTTTCGGGTTAGTGTGTCAAGTACACCTAGCTGTTCAAGTGTAGGATCAGGACCCGATGACATAGAGTCACTAGGAGATGTTTATATATGGGGAGAAGTTTGGGCTGATGGTGTTTCATCTGATGGAAGTGTCACTCAATTCCCTTCCACCACAGATGTATTGGTTCCTAAGCCTTTAGAGTCGAGTGTCGTTCTCGATGTTCAACAAATTGCATCCGGTGTGCGTCACATGGCTTTAGTTACTAGGCAAGGAGAAGTTTTCACTTGGGGAGAGGAGTCCGGTGGCAGACTCGGTCATGGAATGGATAAAGACTTCGGCCGGCCTCAACTTGTCGAGTTTCTAGCAGTTACTAATGTGGAGAGTGTTGCGTGCGGAGAGAATCATACGTGTGCCGTATCGATATCAGATGATCTTTTCTCATGGGGTGATGGTAGATATAATGTAGGACTTCTTGGACACGGTACAGATGTTAGTCATTGGATACCCAAGAGGGTTAGTGGTCCTTTGGAAGGACTTCAAGTTACATCTATTGCATGTGGTACATGGCATTCAGCATTGGCAACTTCTAATGGAAAACTTTTTACATTTGGTGATGGAACATTTGGTGTGTTAGGTCATGGAAATAGAGAGAGTGTTTCATATCCAAAAGAGGTACAATTGTTAAGTGGATTGAAGACTATTAAGGTTGCATGTGGAGTATGGCATACTGCAGCTATTGTAGAGGTTACTTTTCAATCCGGTTCAAATGTTTCATCTAGAAAGCTCTTCACTTGGGGAGACGGTGATAAATATCGGTTAGGACACGGAAACAAGGAAACATATCTTCAACCTACTTGTGTATCGGCATTGATTGAATATAATTTCCACCAAATTGCATGTGGACACACTATGACTGTTGCTTTAACTACTTCCGGACATTTATTTACTATGGGAGGCGCCGAAAACGGTCAACTAGGAAATTCGTTATCCGACGGAAAAATACCTGTACTAGTACAGGGCAAGTTGGTGGATGAATTTGTTGAGGAAATATCATGTGGAGCTCATCATATTGCTGCTTTGACATCAAGGAGTGAATTGTTTACTTGGGGTAAAGGTGCAAATGGAAGATTAGGACATGGAGATATAGATGATAGAAAAACACCAACATTGGTAGAAGCCTTGAAAGAAAGGCATGTCAAAAATATTTCTTGTGGCTCAAGCTTTACTTCTTGCATATGTATTCATAAGTGGGTTTCTGGAGTTGACCAATCCGCTTGCACCGGTTGTCGACAGCCGTTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGCGGATTAGTCCATTGTCATGGTTGTAGTTCAAGAAAAGTTATGAAAGCGGCATTGGCTCCGACACCAGGAAAGCCTCACCGTGTATGTGATTCTTGCTACACTAAACTTAAAGCTGTTGAGGCAAATGCAGGTTCCCATCTTATTAGAAAAGTTACGACGCAAGCTCGCAGTTCTATCGATGCAAGGGAAAGATTATTCGGCCAAGGAGAAATAAGGTCTACAAAAATTCTTTTTCCGCCTTTCTCAGAACCTCTAAAATATCTCGAAATGAGAACTAATATGCTTGGAAACATGCTACCAACTTCACAAATTCCATCAATAACACAAATGAAAGACATTTCATTTCCAAGTTCAACAAGCTCAATTCAAAATGGTCTGAAGCCTGCTATATCTCCAACTCCACCATCAACTCCACCACTCAATTCAAGATCAGTATCTCCATATGCAAGAAGGCCAAGTCCACCGCGTTCTAACAGTCCGGGTTTTTCAAGAAGTCTTATTGATAGTTTGAAGAAAACAAATGAGCTTTTGAACCAAGAAGTCTCAAAATTGCAGAACCAAAATCGAATTTTGAAGCAGAGAAGTAACATGGAAATTCAAAAGCTACAGAAAAATATTCAGGATGTCGCCTCATTGGCTGCAGAAGAATCTTCTAAACATAAAGCATCCAAAGAATATTTTGAGACCATGATAGTTCAGTTGAAGGAAATGTCTGAGCAATTGCCACCAGAAGTTTTAGAGGGTGAAAAATTCAGAAACATGGTTACTGAAGCTGAAAATTTTCTACAACAAAATTCAAAATCTGAAACATCAATTATACCATCCAACTTGGACTCTGAGCAACAAAGTGAAGCTGTTTCAAACAAAGGTTCTTGTAAATTGAATGAACAAATAATAGAAGAAAATAATAATGATTCTGCAGCAGCAGTTAACTCATCCCAAGATATAGGAAATGTAATTCAAGAAAGCAATCCATCTTCTTCATCCAATACTGAAGCAACGGCGGCGGCGCCACAAAGCTCCGAAAATGATTTGAGATCATCTCACCCTTCAGGATCAGGGAGAGAAGGAGAAGCACAAATTATTGAACAGTTTGAACCTGGTGTTTATGTGACACTAGTAGTAAAGCCTAGTGGGATCAGAAGTTTCAAACGTGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCCGAAGAGTGGTGGAACAGAAACAAAGATAGGGTGCTTGAGAGATATAGTCACCTAGCAAAAAATCCTGATGGTATAGGGTCATCTAGCAGTACTCCGCTGCCGCCGCCACCAGCAGCAGCAGCTGAAGAAAACAATGAGGCAGAACCTTCAGAAACTTAA 3258 0.403 MADPASNGGLERDIEQALFTLKKGTQLIKYSRKAKPKVCPFRLSLDETTLIWISHKRERTLKLSSISRIIPGQRTAVFRRYLQPEKDYLSFSLVYNNGERTLDLICKDKAEAEVWFAGLKELVSTGRHNRLTRSELSNSGIDFIPNDHPFGVALEFATSINRGSGRVSTDSASSCGTNPNVGLDHTNMQPRTSIGDGFRVSVSSTPSCSSVGSGPDDIESLGDVYIWGEVWADGVSSDGSVTQFPSTTDVLVPKPLESSVVLDVQQIASGVRHMALVTRQGEVFTWGEESGGRLGHGMDKDFGRPQLVEFLAVTNVESVACGENHTCAVSISDDLFSWGDGRYNVGLLGHGTDVSHWIPKRVSGPLEGLQVTSIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRESVSYPKEVQLLSGLKTIKVACGVWHTAAIVEVTFQSGSNVSSRKLFTWGDGDKYRLGHGNKETYLQPTCVSALIEYNFHQIACGHTMTVALTTSGHLFTMGGAENGQLGNSLSDGKIPVLVQGKLVDEFVEEISCGAHHIAALTSRSELFTWGKGANGRLGHGDIDDRKTPTLVEALKERHVKNISCGSSFTSCICIHKWVSGVDQSACTGCRQPFGFTRKRHNCYNCGLVHCHGCSSRKVMKAALAPTPGKPHRVCDSCYTKLKAVEANAGSHLIRKVTTQARSSIDARERLFGQGEIRSTKILFPPFSEPLKYLEMRTNMLGNMLPTSQIPSITQMKDISFPSSTSSIQNGLKPAISPTPPSTPPLNSRSVSPYARRPSPPRSNSPGFSRSLIDSLKKTNELLNQEVSKLQNQNRILKQRSNMEIQKLQKNIQDVASLAAEESSKHKASKEYFETMIVQLKEMSEQLPPEVLEGEKFRNMVTEAENFLQQNSKSETSIIPSNLDSEQQSEAVSNKGSCKLNEQIIEENNNDSAAAVNSSQDIGNVIQESNPSSSSNTEATAAAPQSSENDLRSSHPSGSGREGEAQIIEQFEPGVYVTLVVKPSGIRSFKRVRFSKRRFHEHQAEEWWNRNKDRVLERYSHLAKNPDGIGSSSSTPLPPPPAAAAEENNEAEPSET 1085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01374 1085 Pfam Transcription factor regulating root and shoot growth via Pin3 994 1048 IPR013591 -
Car03g01374 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 554 605 IPR000408 -
Car03g01374 1085 Gene3D - 449 618 IPR009091 -
Car03g01374 1085 Gene3D - 217 448 IPR009091 -
Car03g01374 1085 ProSiteProfiles PH domain profile. 1 124 IPR001849 -
Car03g01374 1085 PANTHER CHROMOSOME CONDENSATION REGULATOR RCC1 REPEAT PROTEIN 13 1056 - -
Car03g01374 1085 MobiDBLite consensus disorder prediction 749 800 - -
Car03g01374 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 501 550 IPR000408 -
Car03g01374 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 387 436 IPR000408 -
Car03g01374 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 555 602 IPR000408 -
Car03g01374 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 281 329 IPR000408 -
Car03g01374 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 334 383 IPR000408 -
Car03g01374 1085 Pfam Regulator of chromosome condensation (RCC1) repeat 452 498 IPR000408 -
Car03g01374 1085 PRINTS Chromosome condensation regulator RCC1 signature 283 299 IPR000408 -
Car03g01374 1085 PRINTS Chromosome condensation regulator RCC1 signature 333 349 IPR000408 -
Car03g01374 1085 PRINTS Chromosome condensation regulator RCC1 signature 374 390 IPR000408 -
Car03g01374 1085 PRINTS Chromosome condensation regulator RCC1 signature 390 404 IPR000408 -
Car03g01374 1085 PRINTS Chromosome condensation regulator RCC1 signature 491 509 IPR000408 -
Car03g01374 1085 PRINTS Chromosome condensation regulator RCC1 signature 549 570 IPR000408 -
Car03g01374 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 228 280 IPR000408 -
Car03g01374 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 333 387 IPR000408 -
Car03g01374 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 450 501 IPR000408 -
Car03g01374 1085 MobiDBLite consensus disorder prediction 167 188 - -
Car03g01374 1085 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1056 - -
Car03g01374 1085 MobiDBLite consensus disorder prediction 777 800 - -
Car03g01374 1085 CDD PH_PLC_plant-like 12 124 - -
Car03g01374 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 281 332 IPR000408 -
Car03g01374 1085 MobiDBLite consensus disorder prediction 953 992 - -
Car03g01374 1085 MobiDBLite consensus disorder prediction 749 765 - -
Car03g01374 1085 CDD FYVE_like_SF 615 668 - -
Car03g01374 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 502 553 IPR000408 -
Car03g01374 1085 ProSiteProfiles BRX domain profile. 994 1049 IPR013591 -
Car03g01374 1085 SUPERFAMILY FYVE/PHD zinc finger 606 677 IPR011011 -
Car03g01374 1085 SMART fyve_4 604 673 IPR000306 GO:0046872
Car03g01374 1085 Gene3D - 12 130 IPR011993 -
Car03g01374 1085 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 678 IPR013083 -
Car03g01374 1085 SUPERFAMILY PH domain-like 13 123 - -
Car03g01374 1085 MobiDBLite consensus disorder prediction 1050 1085 - -
Car03g01374 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 540 550 IPR000408 -
Car03g01374 1085 Coils Coil 802 854 - -
Car03g01374 1085 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 426 436 IPR000408 -
Car03g01374 1085 SUPERFAMILY RCC1/BLIP-II 222 607 IPR009091 -
Car03g01374 1085 Pfam FYVE zinc finger 606 672 IPR000306 GO:0046872
Car03g01374 1085 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 388 439 IPR000408 -
Car03g01374 1085 Pfam Pleckstrin homology domain 15 123 IPR001849 -
Car03g01374 1085 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 610 672 IPR017455 -
Car03g01374 1085 MobiDBLite consensus disorder prediction 953 989 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01374 Car-Chr3 58902796 58910213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01374 991 1049 Major Intrinsic Protein MIP AT1G31880 38.983 1.54e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01374 - - gmx:100779684 1524.22