Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01358 ATGGCTTCcagtaacagtaccatccaaaagcaaatcaaaagcagtagcagtagcggcagcagaagcGTTGTGGGGTTGAGAAAGAAATATGATTACGACGTGTTTGTCAGTTTCAGAGGCCCAGACACGCGTAACAGTTTCATTGATTATCTTTATGCTTCCTTCAAAAGAAAAGGCATTGTTCCATTCAAGGATAATAAAAATCTCACCAAAGGTGAATTCATACCATCCGAGCTCTGTAGTGCAATTGAAGGTTCTCAGATTTTCATTGTGGTGTTCTCCAAGAACTATGCTTTCTCAACATGGTGTTTGCGAGAATTGGATCAGATTCTTTACCATGTTCTAGTATATGGAAAACGTGTTCTTACTGTTTTCTATGATGTTGGTCCATCCGAGGTTAGACACCAAAAAGGAAGTTATGCTAAAGCTTTTCAAAAACATAACAAAAGTTTCAAACAGGACTTAGAGATGGTCAGAAGATGGAAGTCAGCTCTGACTCAACTGGCCAATATCGCCGGCTGGGATTTACGTCACAAGGCAAAGCATGCAGAAATTGAAAAGATTACTCAAGAGATAAGGATTTCGTTAGGTGACAAATTTTCAGGTCTTCCAAAAGATTTAGTGGGAATTGCTTCTCCTCTAGAAGAATTAAAAGAACGTTTACTTTTGAAGTTGGCTAATGAAGTTCGGGTAGTAGGAATTTGCGGGTTAAGAGGAGTAGGGAAATCAACTCTTGCTAATGTTTTATATGAAAATATATCTCATGAATTCGAAGCATGTTGCGTTATTGATGATGTTAGCAAAATGTATAAAAGCAATGGTCCAATTGGGGTACAAAAGCAAATTCTACGTCAAACTCTAAATGAAGAACACCTTCAGGTACTGAATCCTTATGAGGCAACTAAGTTGATAAGAAGCATGATGCGTCATTTAAAGACCCTTGTAATTCTTGATAACGTTGATCAAATTGAAAAAGTAGAGAAACTAGGCGTGAACCGTGAATGTTTTGGTGCAGGGAGTAGAATAATTATAATATCTAGAAATGAGCATGTCTTGAATGAGTATGAAGTGGATGGAGTTTACAGAGTTCCACTATTGAATTGGGCAAACTCTCTTCAATTATTATTCTACCAAAAAGCTTTGAAATGTGATGATATTACTAGTCATTATGAACGGTTGGCACGTAAGATGTTACAGTTTACACATGGTCTACCTTTGGCAATAAAAGTATTGGGTTCATTTTTATCTACCTTACATATATCTGAATGGAGAAATGCATTGGATAGATTGAACCAAAGACCAAACAAAAATATTATAGATAGGGTGCAATCAAAGTACCAATATTACAATGGGGAGATTCAACCTAGGAGTGCTCATCATCGTTATGTGGAGCAAAGGTACATAGAGGAATATCCTCTGCACATGTACCCCTCTGACCGTGGGTTCAACCCTTCTTTTCTTATGTTTAATGACGAGAATACGGCTTCTTGTTCTATCATGTGA 1503 0.3573 MASSNSTIQKQIKSSSSSGSRSVVGLRKKYDYDVFVSFRGPDTRNSFIDYLYASFKRKGIVPFKDNKNLTKGEFIPSELCSAIEGSQIFIVVFSKNYAFSTWCLRELDQILYHVLVYGKRVLTVFYDVGPSEVRHQKGSYAKAFQKHNKSFKQDLEMVRRWKSALTQLANIAGWDLRHKAKHAEIEKITQEIRISLGDKFSGLPKDLVGIASPLEELKERLLLKLANEVRVVGICGLRGVGKSTLANVLYENISHEFEACCVIDDVSKMYKSNGPIGVQKQILRQTLNEEHLQVLNPYEATKLIRSMMRHLKTLVILDNVDQIEKVEKLGVNRECFGAGSRIIIISRNEHVLNEYEVDGVYRVPLLNWANSLQLLFYQKALKCDDITSHYERLARKMLQFTHGLPLAIKVLGSFLSTLHISEWRNALDRLNQRPNKNIIDRVQSKYQYYNGEIQPRSAHHRYVEQRYIEEYPLHMYPSDRGFNPSFLMFNDENTASCSIM 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01358 500 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 31 440 - -
Car03g01358 500 Gene3D - 197 359 IPR027417 -
Car03g01358 500 Pfam TIR domain 32 192 IPR000157 GO:0007165
Car03g01358 500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 451 IPR027417 -
Car03g01358 500 Gene3D - 366 450 IPR042197 -
Car03g01358 500 SUPERFAMILY Toll/Interleukin receptor TIR domain 28 174 IPR035897 -
Car03g01358 500 MobiDBLite consensus disorder prediction 1 21 - -
Car03g01358 500 PRINTS Disease resistance protein signature 231 246 - -
Car03g01358 500 PRINTS Disease resistance protein signature 307 321 - -
Car03g01358 500 PRINTS Disease resistance protein signature 401 415 - -
Car03g01358 500 Gene3D - 29 196 IPR035897 -
Car03g01358 500 Pfam NB-ARC domain 214 438 IPR002182 GO:0043531
Car03g01358 500 ProSiteProfiles TIR domain profile. 30 196 IPR000157 GO:0007165
Car03g01358 500 SMART till_3 31 171 IPR000157 GO:0007165
Car03g01358 500 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 31 440 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01358 Car-Chr3 58584217 58586440 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01358 31 414 WRKY Transcription Factor Family AT4G12020 26.873 8.66e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01358 - - cam:101512606 965.681