Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01353 ATGACCATGGataatcatcatcatcataattgggaaacttctgataataataataataataaACTTGATGGTCCTAAATTCAAATCAGCTCAACCTCCTTCATTATCACCAATTTCTCCTTCTTCTTACTTACCCTTTTCATCTACTTTCAGTCCTACTGACTTCTTAATCTCACCTTTCTTTCTTTCTTCTCCAAATGTTTTTGCTTCTCCAACTACTGAGGATTTTGCTAGCCAGAGCTTCAATAACTGGAAGAACAGTTTAGGGGAAGGTGACAAGGAGGATGAGAAAAACATCTCTGACTTCTCTTTTCAAACACAAACAAAGTCTGCATCTGATTTTCAATCTTCCTCAAACTTGTTTCAATTGGAACCAATTAAGAAACAAGATATGTGGAAGTTCAATGTACCTACAAAGCAAACTGATTTTTCATCTGAGAGGACAGAATCAAAATCTGAATTCCCATCAACTCAGAGCTTTTCCTCAGAAATGGCACCAAGCGAACTAGAAACACATGGTAACTCAGTTACCCAATCCGGTTATTTTAACTATACAAATGCATCTCAGCCTGTTAGAGAACAAAGGAGATCACAAGATGGATTCAACTGGAGAAAATATGGACAGAAACAAGTGAAAGGAAGCGAAAATCCGCGAAGTTATTACAAGTGCACACATCTGAATTGCTCAATGAAGAAGAAAGTTGAGACGGGTTTGGATGGACATATTACTGAAATTGTATATAAGGGAAGTCATAACCACCCTAAGCCTCAGTCTACTAGAAGAACAAGCTCTCAACCTTCTTCGTCCTGCACAAACTCGGGAATTTCTGAACAATCAGTTGTGTCTCTCGGTAATCCACAAATGGATCGTGTCTCCATACAGGAAGATTCTTCGGCATCTGTTGGAGAGGAAGACTTTGAGCAAACATCACAAACTAGTTATTCTGGAGGAAACGACGATGCCCTTGGACCAGAGGCCAAAAGATGGAAGGGTGATAATGAAAATGATGGCTATTCTGCCGCAGGTGGAGGAAATATGGACAGAAAGTTGTTAAAGGAAATCCAAATGCAAGGAGCTATTACAAATGCACTGCCCCTGGTTGTTCAGTGA 1110 0.3829 MTMDNHHHHNWETSDNNNNNKLDGPKFKSAQPPSLSPISPSSYLPFSSTFSPTDFLISPFFLSSPNVFASPTTEDFASQSFNNWKNSLGEGDKEDEKNISDFSFQTQTKSASDFQSSSNLFQLEPIKKQDMWKFNVPTKQTDFSSERTESKSEFPSTQSFSSEMAPSELETHGNSVTQSGYFNYTNASQPVREQRRSQDGFNWRKYGQKQVKGSENPRSYYKCTHLNCSMKKKVETGLDGHITEIVYKGSHNHPKPQSTRRTSSQPSSSCTNSGISEQSVVSLGNPQMDRVSIQEDSSASVGEEDFEQTSQTSYSGGNDDALGPEAKRWKGDNENDGYSAAGGGNMDRKLLKEIQMQGAITNALPLVVQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01353 369 MobiDBLite consensus disorder prediction 252 318 - -
Car03g01353 369 MobiDBLite consensus disorder prediction 139 217 - -
Car03g01353 369 SMART WRKY_cls 197 255 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g01353 369 Gene3D WRKY domain 183 257 IPR036576 GO:0003700|GO:0006355|GO:0043565
Car03g01353 369 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 297 341 - -
Car03g01353 369 PANTHER TRANSCRIPTION FACTOR WRKY FAMILY-RELATED 16 289 - -
Car03g01353 369 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 297 341 IPR044810 GO:0003700
Car03g01353 369 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 289 IPR044810 GO:0003700
Car03g01353 369 MobiDBLite consensus disorder prediction 1 38 - -
Car03g01353 369 MobiDBLite consensus disorder prediction 248 343 - -
Car03g01353 369 MobiDBLite consensus disorder prediction 150 196 - -
Car03g01353 369 Pfam WRKY DNA -binding domain 198 254 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g01353 369 ProSiteProfiles WRKY domain profile. 192 256 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car03g01353 369 SUPERFAMILY WRKY DNA-binding domain 194 256 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01353 Car-Chr3 58542757 58545282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01353 22 334 WRKY Transcription Factor Family AT2G38470 40.483 8.78e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Car03g01353 WRKY 5.7e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01353 K13424 - gmx:100776837 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01353 03 58542757 58545282 Car03g01353 03 58542757 58545282 ECH
Car03g01353 03 58542757 58545282 Car06g02437 06 26966957 26971891 PCT