Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01330 ATGAAGATTGATACCGTTTCTGGAGAAAGGAAATCACGCAAGAGACGCAGTGGTGGAAGAACTGATTCAGTAGAAGACACTCTTGAGAAGTGGAAGAAGTACAACAGACAGCAACAACAAAAGCTTGGTTTTGGAGATAATGGGGTGGAATTGGTTCACAAAGTTCCTGCAAAAGGTTCAAGAAAAGGGTGCATGAGAGGTAAAGGTGGTCCTCAGAATTCTGACTGCAACTTCAGAGGAGTTAGACAGAGGATTTGGGGTAAATGGGTTGCGGAGATTCGCGAACCTATCAACGGTAAACATGTTGGTGAGAAAGCAAATAGGCTTTGGCTTGGTACTTTCACTACTGCACATGATGCTGCTCTTGCTTATGATAAAGCAGCTAAGGCCATGTATGGACCTAGTGCTCGTTTGAACTTTCCTAATGGATCACCACCATCATCTACTGCTGGTTCTGCAGAGTCTCTGAATGGTGAGGATCTTGCAAAGGCTGAAGAGCTGGAGAGTAATCTTCGTCAGTCTCATGAAGAGAATAAGATTTTTTCTAATGATTTTGCTGTCGATGACTCAGAGGAAGCCAAGGAAGTGATCAGAAATAAGAAAAGTAAGAAAATGGTTCATCAAGGGTCTTACAAGAATGTTAAGTTTGAAACACCTAGAGAAAACGAACGACTAGAGAGTGAATTGGAGAAAGTTTTGGAGAATTCTGGCATAGGTGGAGAGTGTTTTCATGTGCAGAAGGAGGCTATAAATACAGATATGAATTTAGGAGCTGATTGTAGCTCTTCTGATGGAGTAGAAAATGGGACTCTGGTGAAAAGTGAAGAAACAGCAGGAGGATTGGTGGAGGATTTGAAATTCTTTGAGTTGAGCTGCAGCAACCATTTCCTTGGGAACCTACAGAATATGCTTCCAGATAGCAATACAAGACCAAATTCTGAGCATTATGACATCAAAACCAAAGATTCATTTGAGAAGAAACATAAGAATGAAGTAACTTCTGCAGAAATCAAGGAATTTTGTCGTGGCACTGGCAAGTCCTCCAGGATAAGCCATGGTCAGTCACAAAATGAGCAAAATAAAAATGGACATTTTGATGGGATGAAAAGTGAGCTCAAGGGATTGGAATGCAAGCTGAGAGGCCAATCTAATGATGAGGCACAAATAGTAGTACCTTACATGCCGGGAATTCATCTGTTTGGTGGTGACAGTGTGGGACCAATTGAAAGAATGTCCCAAGTAGAGGATTTGAACTACAATACTAATAAAAACACTAAATTGAAAGAGAAAGGAAATAATGGAAGTACACTGCATGGATTTAGTTCCGGGAAAAGTAGGAAGCTGAGTGATCTTTCTCAACAGCTGCAGAAATTGGGTAGTTACCTGCCTGAAAATTGGAATAATAGACAGTTTGCAGATCTTGAAGTAGGTTATGATTATAGTTTCTTAAGTCCTGATTATGATTTTGGCTTATTGGAAGAGAAGAAGTTACTAGACGTATGTTTTTCACATATAGGATCTTAA 1524 0.4022 MKIDTVSGERKSRKRRSGGRTDSVEDTLEKWKKYNRQQQQKLGFGDNGVELVHKVPAKGSRKGCMRGKGGPQNSDCNFRGVRQRIWGKWVAEIREPINGKHVGEKANRLWLGTFTTAHDAALAYDKAAKAMYGPSARLNFPNGSPPSSTAGSAESLNGEDLAKAEELESNLRQSHEENKIFSNDFAVDDSEEAKEVIRNKKSKKMVHQGSYKNVKFETPRENERLESELEKVLENSGIGGECFHVQKEAINTDMNLGADCSSSDGVENGTLVKSEETAGGLVEDLKFFELSCSNHFLGNLQNMLPDSNTRPNSEHYDIKTKDSFEKKHKNEVTSAEIKEFCRGTGKSSRISHGQSQNEQNKNGHFDGMKSELKGLECKLRGQSNDEAQIVVPYMPGIHLFGGDSVGPIERMSQVEDLNYNTNKNTKLKEKGNNGSTLHGFSSGKSRKLSDLSQQLQKLGSYLPENWNNRQFADLEVGYDYSFLSPDYDFGLLEEKKLLDVCFSHIGS 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01330 507 SMART rav1_2 77 147 IPR001471 GO:0003700|GO:0006355
Car03g01330 507 MobiDBLite consensus disorder prediction 343 367 - -
Car03g01330 507 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 380 - -
Car03g01330 507 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 380 - -
Car03g01330 507 Coils Coil 164 184 - -
Car03g01330 507 MobiDBLite consensus disorder prediction 347 363 - -
Car03g01330 507 MobiDBLite consensus disorder prediction 1 31 - -
Car03g01330 507 SUPERFAMILY DNA-binding domain 77 141 IPR016177 GO:0003677
Car03g01330 507 CDD AP2 76 142 IPR001471 GO:0003700|GO:0006355
Car03g01330 507 Pfam AP2 domain 76 133 IPR001471 GO:0003700|GO:0006355
Car03g01330 507 Gene3D AP2/ERF domain 77 142 IPR036955 GO:0003700|GO:0006355
Car03g01330 507 PRINTS Ethylene responsive element binding protein signature 78 89 IPR001471 GO:0003700|GO:0006355
Car03g01330 507 PRINTS Ethylene responsive element binding protein signature 107 123 IPR001471 GO:0003700|GO:0006355
Car03g01330 507 ProSiteProfiles AP2/ERF domain profile. 77 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01330 Car-Chr3 58222255 58224978 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01330 13 207 AP2-EREBP Transcription Factor Family AT2G40340 43.137 1.12e-44 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g01330 AP2 8.8e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01330 - - cam:101505842 986.482