Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01308 ATGGAGTGCAACTTTCCTCCTCCACCTTGCAACAACAATACTATCACTTCTTCATCTTCAAAAACAAAGAGAAAGGAGAAAAAGGGTGTGAAGAAAAGCAAAGGTTCATCATCAGTGAAACTTTCAACTGATCCACAAAGTGTTGCAGCTAGAGAAAGAAGACATAGAATCAGTGACAGGTTCAAGATTCTTCAGAGTATGGTACCTGGTGGGAGTAAAATGGACACTGTTTCTATGTTGGAAGAAGCTATTCACTATGTTAAGTTTCTTAAGACACAGATTTGGCTTCATCAAACAATGATTAACTTTGTTGATGATGATCACATGTTCATTCCTCAAGAACATAACAACTTTCATTCTCTTGATCAACATATTAATCCTAACTCAAGTTCAATTGAGCCTTTGGATACTTTGCCACAGTTACCACTAGAGCAGTTCTGTTTTCAAGGTGAAGAAGAGAACAAATTCATCTTTAATATGCCACTATGA 489 0.3661 MECNFPPPPCNNNTITSSSSKTKRKEKKGVKKSKGSSSVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEEAIHYVKFLKTQIWLHQTMINFVDDDHMFIPQEHNNFHSLDQHINPNSSSIEPLDTLPQLPLEQFCFQGEEENKFIFNMPL 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01308 162 CDD bHLH_AtIND_like 42 101 - -
Car03g01308 162 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 41 90 IPR011598 GO:0046983
Car03g01308 162 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 18 125 IPR045843 GO:0003700|GO:0006355
Car03g01308 162 PANTHER TRANSCRIPTION FACTOR LAX PANICLE 1 18 125 - -
Car03g01308 162 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 102 IPR036638 GO:0046983
Car03g01308 162 MobiDBLite consensus disorder prediction 1 53 - -
Car03g01308 162 Gene3D - 45 99 IPR036638 GO:0046983
Car03g01308 162 SMART finulus 47 96 IPR011598 GO:0046983
Car03g01308 162 Pfam Helix-loop-helix DNA-binding domain 51 90 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01308 Car-Chr3 57975210 57975979 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01308 20 119 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G43175 44.000 3.69e-22 87.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g01308 HLH 5.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01308 - - gmx:113000114 164.466
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01308 03 57975210 57975979 Car03g01308 03 57975210 57975979 ECH