Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01272 ATGGGTTCTCGCCAAATACAACAAGAACCATGGTTATTGGAGAATGGTAATCCAAAGGTTTTGACAAAGGAAGCTAGACATGGACATGGAAGAAGTCGAACAGCACATAACATGTCTTCTTCTTCCTTACGCAAGAAATCTGATCATACTCTTGTGTCTAAGGTTCGATGTGTTTTGCTTAGGAATTTTTTGGTTAATCTCCAAGAGGTTGTTCTTGGTACCAAACTTTCCATTCTCTTTCCTGCTATCCCTGCTGCCATTTTGTCTCATTACTTTGGCTTAGGACAATCATGGGTTTTTATATTGAGCTTGCTTGGGCTTACTCCACTTGCTGAACGTGTGAGCTTCCTCACTGAACAAATTGCATTCTACACTGGTCCTACAGTTGGAGGACTTCTTAATGCAACATGTGGGAATGTTACTGAACTCATTATAGCAATATTTGCTCTTACTAGCAACAAAGTTGCTGTGGTTAAGTATTCACTTTTGGGTTCTGTCCTTTCAAACCTTCTTCTTGTTCTTGGAACCTCTCTACTTTGTGGTGGCGTTGCAAATCTTGGACAGGAACAAAAATATGACAGAAGACAAGCAGATGTGAACTCACTTATGCTGCTTTTGGCATTGTTATGCCACTTGCTTCCATTACTATTCAGATACAGTGATCCCTCTGCTGATCTCACTGTTGAACCTTCCCTCTACTTGTCAAGATCTGCTAGCATTGTTATGTTGGGTGCATATTTTGTTTACCTAATCTTTCAACTATGGACACACAGACAATTATTTGAAGCTGAAGAAGAAAATGAAGGTGAGAACAATGAGTCAGATGAACAGGCTGTGATTGGATTTTGGAGTGGATTTGCTTGGTTGGCTGGAATGACTGTGTTCATTGCTTTGTTGTCTGAATATGTGGTGGATACAATTGAGGATGCATCAGATTCATGGGGTTTATCTGTGAGCTTCCTCAGCATTATCTTGCTGCCAATAGTAGGCAATGCAGCTGAACATGCAGGAGCAATCATTTTTGCTTTCAAGAACAAGCTTGACATATCCTTAGGTGTTGCATTGGGTTCAGCTACTCAAATTGCTATGTTTGTGGTTCCTCTGTGTGTGATTGTTGCTTGGATAATGGGTGTGAACATGGACTTGAACTTCAACCTCCTTGAGACAGGTTCTCTTGCTTTGGCAATTATAGTTACAGCCTTCACTTTACAGGATGGTACTTCTCACTACATGAAAGGGGTTATTCTCTTGCTTTGCTACTTTGTTATTGGAGCTTGCTTCTTTGTACAAAGAACAGTCACAACAGACCAAAATGATGTTACTAAGATCAATATTAAGTCGGTCACTGATGCAGTTTTAAGTGCCTAA 1368 0.4028 MGSRQIQQEPWLLENGNPKVLTKEARHGHGRSRTAHNMSSSSLRKKSDHTLVSKVRCVLLRNFLVNLQEVVLGTKLSILFPAIPAAILSHYFGLGQSWVFILSLLGLTPLAERVSFLTEQIAFYTGPTVGGLLNATCGNVTELIIAIFALTSNKVAVVKYSLLGSVLSNLLLVLGTSLLCGGVANLGQEQKYDRRQADVNSLMLLLALLCHLLPLLFRYSDPSADLTVEPSLYLSRSASIVMLGAYFVYLIFQLWTHRQLFEAEEENEGENNESDEQAVIGFWSGFAWLAGMTVFIALLSEYVVDTIEDASDSWGLSVSFLSIILLPIVGNAAEHAGAIIFAFKNKLDISLGVALGSATQIAMFVVPLCVIVAWIMGVNMDLNFNLLETGSLALAIIVTAFTLQDGTSHYMKGVILLLCYFVIGACFFVQRTVTTDQNDVTKINIKSVTDAVLSA 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01272 455 Pfam Sodium/calcium exchanger protein 285 423 IPR004837 GO:0016021|GO:0055085
Car03g01272 455 Pfam Sodium/calcium exchanger protein 98 255 IPR004837 GO:0016021|GO:0055085
Car03g01272 455 PANTHER VACUOLAR CATION/PROTON EXCHANGER 3 7 441 - -
Car03g01272 455 MobiDBLite consensus disorder prediction 24 45 - -
Car03g01272 455 TIGRFAM cax: calcium/proton exchanger 82 428 IPR004798 GO:0006816|GO:0015369
Car03g01272 455 Gene3D - 127 268 IPR044880 -
Car03g01272 455 Gene3D - 273 428 IPR044880 -
Car03g01272 455 TIGRFAM caca2: calcium/proton exchanger 62 428 - -
Car03g01272 455 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 7 441 IPR004713 GO:0006812|GO:0008324|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01272 Car-Chr3 57188921 57193141 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01272 6 431 Antiporters AT2G38170 70.766 0.0 590
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01272 K07300 - gmx:100779440 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01272 03 57188921 57193141 Car03g01272 03 57188921 57193141 ECH
Car03g01272 03 57188921 57193141 Car06g02519 06 29388115 29391960 PCT