Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01268 ATGGGGTTTGTTATCAAAAGAAGGAAGAAAGAAGAAAAGGGATTAAAAGGAGAGATGCGAAAGTCTTTCAAGGATTCTCTTAAAGCTCTTGAAGCTGATATCCATTTTGCCAATACACTAGCTTCGGATTATCCAAGTGATCAGGACGGAGCCTGCCTTCAAATGAGATTGTCCTATAGCTCGGCTGCCCAATTCCTTCTTTTTTTTGTTCAGTGGACTGACTGTCACCTTGCTGGAGCCTTAGGATTGCTTAAAATTCTTATATACAAGGCCTATAAGGATGGGAAGACAACCATGTCTATTTATGAAAGAAAAGCCAGTTTGAAGGAGTTTTATGGTGTGATCTTTCCCTCTTTATTGCAACTTCAGAGAGGAATCACTGATGTTGACGATAGGAAACAAAAACATCTGTGTGCTACTAGGTACAAGCCTAAAGATTTAATAATCAAAGGAAAAAGCTATGAAATCGACATAGAAAGAGAAGAAGAATGCGGTATTTGCATGGAGATGAACAGCATGGTTGTACTGCCAAGTTGCAATCATTCAATGTGTATGAAATGCTACCGCGACTGGCATGCAAGATCTCAATCATGCCCTTTCTGTCGGGACAGTCTTAAAAGAGTAAACTCTGGTGACCTTTGGATCTACATGAACAGCAATGAAATGGATGATCTTGATTCAATCAACAAGGAGAATTTGAAAAGACTATTTTTGTATATAGAAAAGTTGCCTCTTGTTGCTAGACCTTATATTCACATCATATCATCACAACTTCTTGTTGCCTCTTAG 789 0.3866 MGFVIKRRKKEEKGLKGEMRKSFKDSLKALEADIHFANTLASDYPSDQDGACLQMRLSYSSAAQFLLFFVQWTDCHLAGALGLLKILIYKAYKDGKTTMSIYERKASLKEFYGVIFPSLLQLQRGITDVDDRKQKHLCATRYKPKDLIIKGKSYEIDIEREEECGICMEMNSMVVLPSCNHSMCMKCYRDWHARSQSCPFCRDSLKRVNSGDLWIYMNSNEMDDLDSINKENLKRLFLYIEKLPLVARPYIHIISSQLLVAS 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01268 262 PANTHER RING FINGER PROTEIN 41, 151 14 261 - -
Car03g01268 262 SMART ring_2 164 201 IPR001841 -
Car03g01268 262 SUPERFAMILY RING/U-box 153 207 - -
Car03g01268 262 ProSitePatterns Zinc finger RING-type signature. 179 188 IPR017907 -
Car03g01268 262 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 210 IPR013083 -
Car03g01268 262 ProSiteProfiles Zinc finger RING-type profile. 164 202 IPR001841 -
Car03g01268 262 Pfam Zinc finger, C3HC4 type (RING finger) 161 207 - -
Car03g01268 262 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 14 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01268 Car-Chr3 57126904 57131269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01268 112 206 C3H Transcription Factor Family AT5G01960 29.703 3.61e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01268 K25840 - gmx:100814293 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01268 03 57126904 57131269 Car03g01268 03 57126904 57131269 ECH