Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01267 ATGACAAAGGGAAAGGGAACAGGAAGGACTTCAAGGGACGTATTGAAACCAGTTGATGACCGAAAGGTAGGAAAGCGAAAGGCTGCTTATAAACCGGAGAAGAGCAGCGCACCAAAGCCTACTAAGAAGGAGAAGAAGGCCAAAAAAGATCCCAACAAACCGAAAAGACCTCCGAGCGCTTTCTTTGTCTTCCTTGAGGAGTTCAGAAAGACTTTTAAGGCAGAAAATCCTACTGTGAAGGCCGTATCAGCTGTTGGAAAGGCTGGAGGAGAAAAATGGAAATCCTTGACTAAGGCCGAAAAAGCTCCATATGAAGCCAAGGCTGCAAAAAGGAAAGTTGAGTATGAAAAACTTCTGAATGCTTATAACAACAAGGCAAGTTCAGCGGATGATGAGGAGGAGGAATCTGACAAATCCAAATCCGAAGTTAATAATGAAGATGAAGCAAGTGCAGAGGATGACCACCAAgacgaggatgatgatgatgaggacgacgatgatgatgaggaagatgatgattga 522 0.3946 MTKGKGTGRTSRDVLKPVDDRKVGKRKAAYKPEKSSAPKPTKKEKKAKKDPNKPKRPPSAFFVFLEEFRKTFKAENPTVKAVSAVGKAGGEKWKSLTKAEKAPYEAKAAKRKVEYEKLLNAYNNKASSADDEEEESDKSKSEVNNEDEASAEDDHQDEDDDDEDDDDDEEDDD 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01267 173 Gene3D High mobility group box domain 37 159 IPR036910 -
Car03g01267 173 MobiDBLite consensus disorder prediction 9 55 - -
Car03g01267 173 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 54 123 IPR009071 -
Car03g01267 173 MobiDBLite consensus disorder prediction 147 173 - -
Car03g01267 173 MobiDBLite consensus disorder prediction 127 146 - -
Car03g01267 173 Pfam HMG (high mobility group) box 54 123 IPR009071 -
Car03g01267 173 MobiDBLite consensus disorder prediction 93 118 - -
Car03g01267 173 SUPERFAMILY HMG-box 39 124 IPR036910 -
Car03g01267 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 2 164 IPR031061 -
Car03g01267 173 MobiDBLite consensus disorder prediction 1 58 - -
Car03g01267 173 CDD HMGB-UBF_HMG-box 54 117 - -
Car03g01267 173 SMART hmgende2 53 124 IPR009071 -
Car03g01267 173 Coils Coil 112 149 - -
Car03g01267 173 PANTHER HIGH MOBILITY GROUP B PROTEIN 1 2 164 - -
Car03g01267 173 Coils Coil 171 173 - -
Car03g01267 173 PRINTS High mobility group (HMG1/HMG2) protein signature 15 35 - -
Car03g01267 173 PRINTS High mobility group (HMG1/HMG2) protein signature 88 107 - -
Car03g01267 173 PRINTS High mobility group (HMG1/HMG2) protein signature 107 127 - -
Car03g01267 173 MobiDBLite consensus disorder prediction 87 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01267 Car-Chr3 57121393 57124574 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Car03g01267 HMG_box 8.8e-24 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01267 K25507 - twl:119999017 177.178
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01267 03 57121393 57124574 Car03g01267 03 57121393 57124574 ECH