LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Car03g01251	ATGGCACAaccttcattgtcttcttccttcacatatgattggacttatgatgttttcctaagttttagaggacttgatacccgaaacaacttcactggtaatctctacaattctctccatcaaagaggcatacacactttcattgatgaagaagaaatcagagaaggagatgaaatcacacctactattctccaagccattaaacactctaggattttcattgctattttctcagatcactatgcatcttcaacgttttgtttgaatgaactagtcatgattcttgagtgttccaagtcacaaggacggttgtttttgccggttttctatgatgtggatccatttcaaattcgatacatgactggaacttatgctgaggctttcacaaaacatgaggctaggttcaaagatgaaaaggataaggtgcagaaatggagggattctttacttctagctgctaatgtgttgggatggcatttcaaaccagggtttgaatcagagtataagtttatcagaaagatagtaaaagaggtctcattaaaaataaatcggattcctttgcatgttgcaaagaagccaattgggttgaagtctcaaatgttagaagtaatatctctccttggacttgagtctaatgagagagtgaacatggtaggcatttatggaataggaggaataggaaaatcaactattgctcgtgctgtgtataactcaattgctgatcaattcgaaggtgtgtgttttcttggtgacataagagtgaaggatattcatcatggtcttgcacaacttcaagaaacactactttctgaagtactaggtgagaaggatattaaagtaggagatgtttacagaggaatttcaataattaaaaggaggctccaaagaaagaaggttcttttgattcttgataatgttgacaaagagaaacagctacaggtacttgtaggaggacatgattggtttggctttggcagcaagatcataatcactacaagagataaacatttgcttgccattcaaggtactatgaaagtatatgaggttaaacagctaaaaggtgaaaaagctcttgaattgtttagttggcatgcgtttaaaaataaaaaagttgatccagattatgtggatatggcaaaacatgcaatatcttattgtcatggtcttcctttggctttggaggtaattggttctcacttgtttggaaaatgtttagctgtatggaaatcctcatttgctaaatatgaaagagtcattcgtaaagatatccatgaaattcttaaagttagctatgatgatttggaagaagatgtaaagggtatttttctagatatagcttgtttcttcaattcttatgaaataagttatgttagagaaatactatacttacatggttttcatgcggaagatggcatacaagagctaactgacaaatctctcatgaaaattgatgttaatggctgtgtgagaatgcatgatttgattcaagacatgggtagagaaattgtgaggcaagaatcaacgttggagcctggaaaacgcactagattatggtttagtgatgacattgtgcatgttttggaagaaaacaagggaagtgatacaattgaagtgataatcgctgacttccgcaaagacataaaagtgaaatggtgtggaaaagcattcggacatatgaagaacttgagaattttaataataagaaatgcacgattttccagaggtcctcaaattcttccaaatagtttgagagtgcttgattggagtggatatcaatcatcctctttaccatctgattttAATCCCAAGAATCTTGCCATACTTAACATGTCAGAAAGCTGCCTTAAATGGTTCGAATCACTCAAGGTGTTTGAGATGTTGAGCTTTCTGGATTTTGAAGGTTGGCTTATAGAGGGGAGAGTAAATATACATGACTATGGAATAAATGTAACGTCAATGCGTTTTTGGTTCAGAAATAAATTCCCTAGGATAGCTCTATGGTGTTTTATAGAACCTGGAAAACATTTGGATAGCGTGGTGTTGAATTTCAAGTTGAATGTACTCATCAATGGCATTACACTACTCATTTCTTCATGTGATTACATATTTTATACACAAAGAAAGACAGAGCAAATGCTTTGTTGTGAGATACAGGGCAAAGTGGAGGATGTTGTTTTAGAAAATGAGTGGAACCAAGTGGAGATTTTATGTGATATGGATCATCTCAAGCCATGTGAATCTGAAAGGATTCTAAAGTGGTCTCTCATATATGTCTACTCAGAAAACAAAAAGGAGGATTTCAGGTTATTTGACAATCCTGATTCTCCTTTGTCAAATAAAGAGATATTTCAAGAGATGGAGAGAGTGGAAGAAATGTTATGGGTATTTGGCTCCACTTTTGCTAGAATGGAACAAGAATTATTTGCTGATGAAGACATGTTACATGTGGAAGATGACACTATTGAATAG	2469	0.0992	MAQPSLSSSFTYDWTYDVFLSFRGLDTRNNFTGNLYNSLHQRGIHTFIDEEEIREGDEITPTILQAIKHSRIFIAIFSDHYASSTFCLNELVMILECSKSQGRLFLPVFYDVDPFQIRYMTGTYAEAFTKHEARFKDEKDKVQKWRDSLLLAANVLGWHFKPGFESEYKFIRKIVKEVSLKINRIPLHVAKKPIGLKSQMLEVISLLGLESNERVNMVGIYGIGGIGKSTIARAVYNSIADQFEGVCFLGDIRVKDIHHGLAQLQETLLSEVLGEKDIKVGDVYRGISIIKRRLQRKKVLLILDNVDKEKQLQVLVGGHDWFGFGSKIIITTRDKHLLAIQGTMKVYEVKQLKGEKALELFSWHAFKNKKVDPDYVDMAKHAISYCHGLPLALEVIGSHLFGKCLAVWKSSFAKYERVIRKDIHEILKVSYDDLEEDVKGIFLDIACFFNSYEISYVREILYLHGFHAEDGIQELTDKSLMKIDVNGCVRMHDLIQDMGREIVRQESTLEPGKRTRLWFSDDIVHVLEENKGSDTIEVIIADFRKDIKVKWCGKAFGHMKNLRILIIRNARFSRGPQILPNSLRVLDWSGYQSSSLPSDFNPKNLAILNMSESCLKWFESLKVFEMLSFLDFEGWLIEGRVNIHDYGINVTSMRFWFRNKFPRIALWCFIEPGKHLDSVVLNFKLNVLINGITLLISSCDYIFYTQRKTEQMLCCEIQGKVEDVVLENEWNQVEILCDMDHLKPCESERILKWSLIYVYSENKKEDFRLFDNPDSPLSNKEIFQEMERVEEMLWVFGSTFARMEQELFADEDMLHVEDDTIE	822

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Car03g01251	822	Gene3D	-	184	348	IPR027417	-
	Car03g01251	822	PRINTS	Disease resistance protein signature	217	232	-	-
	Car03g01251	822	PRINTS	Disease resistance protein signature	557	573	-	-
	Car03g01251	822	PRINTS	Disease resistance protein signature	386	400	-	-
	Car03g01251	822	PRINTS	Disease resistance protein signature	293	307	-	-
	Car03g01251	822	SMART	till_3	15	155	IPR000157	GO:0007165
	Car03g01251	822	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	10	630	-	-
	Car03g01251	822	SUPERFAMILY	L domain-like	542	639	-	-
	Car03g01251	822	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	10	630	IPR044974	GO:0006952
	Car03g01251	822	Pfam	NB-ARC domain	207	432	IPR002182	GO:0043531
	Car03g01251	822	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	180	445	IPR027417	-
	Car03g01251	822	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	158	IPR035897	-
	Car03g01251	822	Gene3D	-	351	435	IPR042197	-
	Car03g01251	822	ProSiteProfiles	TIR domain profile.	14	182	IPR000157	GO:0007165
	Car03g01251	822	Gene3D	Ribonuclease Inhibitor	537	654	IPR032675	-
	Car03g01251	822	SMART	AAA_5	214	353	IPR003593	-
	Car03g01251	822	Gene3D	-	12	183	IPR035897	-
	Car03g01251	822	Pfam	TIR domain	16	181	IPR000157	GO:0007165
	Car03g01251	822	SUPERFAMILY	"Winged helix" DNA-binding domain	422	528	IPR036390	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Car03g01251	Car-Chr3	56819923	56824409	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Car03g01251	10	616	WRKY Transcription Factor Family	AT4G12020	32.637	9.94e-72	255

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Car03g01251	-		-	mtr:MTR_3g020650	1038.48