Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01248 ATGTTTTCTTGCTATATGCAATTTTTATCATCTAGAAAAATGAATAGCGAAATTGAAGTTCTTTCACCATCCTCATATATCCAAAATTCCAATTGGTTGTTTCAAGAAAACAAAGGTGCAAAATGGACACAAGAAGAGAACAAGCTGTTTGAGAATGCTTTAGCTTATTATGATAAGGATACTCCTGATAGATGGATAAGGGTTGCTGAGATGATTCCTGGAAAAACTGTTGGTGATGTGATTAAACAGTATAGGGAGCTTGAAGAAGATGTTTGTGTTATTGAAGCTGGTTTGATTCCTGTTCCTGGTTATACCACTAGTTCTTTCACATTGGATTGGGCTAACAATCAAGGATTTGATGAGTTCAAGCAATTTTGTAGTGTTGGTGGGAAAAGGGGTGCTTCGACTCGGCCGACTGAGCAGGAAAGGAAGAAAGGTGTGCCATGGACCGAAGAGGAGCATAGGCAATTTCTTCTGGGTCTGAAGAAGTATGGTAAGGGAGATTGGAGAAACATCTCTAGGAATTTCGTGACGACAAGGACACCTACTCAAGTTGCAAGTCATGCTCAGAAGTACTTCATCAGACAAGTAACAGGAGGGAAGGATAAGCGGAGATCGAGTATCCATGATATCACAGTCGTCAATCTCCCAGAAACAAAATCTCCTTTGTCTGACGGTAGCATGCCTTCTCCAAATCCGCAGAAGAATCATAAATTGTCTAGCATGATTAAGCAGGAATATGACTGGAAATTACCAGATGAGGAGGCTATGCCATTTGTTTTCAATTCAACAACTAAAGGAAACATGTTTGTGGCACCATTGTGCGGGATTGCGTCACACGAGTCGAAACCGCCGGGGTGTAATGTACTCCGAGGCATTCAACATGGATGCCAGTTTTCACTACCTTTTGATACTATATTGCAAATGCAGCATCAATGA 939 0.41 MFSCYMQFLSSRKMNSEIEVLSPSSYIQNSNWLFQENKGAKWTQEENKLFENALAYYDKDTPDRWIRVAEMIPGKTVGDVIKQYRELEEDVCVIEAGLIPVPGYTTSSFTLDWANNQGFDEFKQFCSVGGKRGASTRPTEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQVTGGKDKRRSSIHDITVVNLPETKSPLSDGSMPSPNPQKNHKLSSMIKQEYDWKLPDEEAMPFVFNSTTKGNMFVAPLCGIASHESKPPGCNVLRGIQHGCQFSLPFDTILQMQHQ 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01248 312 SUPERFAMILY Homeodomain-like 142 196 IPR009057 -
Car03g01248 312 CDD SANT 41 87 IPR001005 -
Car03g01248 312 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 144 196 IPR006447 GO:0003677
Car03g01248 312 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 141 197 IPR017930 -
Car03g01248 312 PANTHER TRANSCRIPTION FACTOR DIVARICATA 14 257 - -
Car03g01248 312 SUPERFAMILY Homeodomain-like 41 95 IPR009057 -
Car03g01248 312 SMART sant 145 195 IPR001005 -
Car03g01248 312 SMART sant 38 90 IPR001005 -
Car03g01248 312 MobiDBLite consensus disorder prediction 218 238 - -
Car03g01248 312 Gene3D - 147 197 - -
Car03g01248 312 ProSiteProfiles Myb-like domain profile. 141 193 IPR001005 -
Car03g01248 312 MobiDBLite consensus disorder prediction 130 149 - -
Car03g01248 312 ProSiteProfiles SANT domain profile. 149 197 IPR017884 -
Car03g01248 312 ProSiteProfiles Myb-like domain profile. 34 88 IPR001005 -
Car03g01248 312 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 14 257 IPR043363 -
Car03g01248 312 CDD SANT 148 193 IPR001005 -
Car03g01248 312 Gene3D - 34 101 - -
Car03g01248 312 Pfam Myb-like DNA-binding domain 41 86 IPR001005 -
Car03g01248 312 Pfam Myb-like DNA-binding domain 148 193 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01248 Car-Chr3 56775876 56778604 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g01248 Myb_DNA-binding 4.2e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01248 - - var:108329798 479.559
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01248 03 56775876 56778604 Car02g01672 02 45681382 45683814 ECH
Car03g01248 03 56775876 56778604 Car03g01248 03 56775876 56778604 ECH
Car03g01248 03 56775876 56778604 Car05g01239 05 55631520 55634281 ECH
Car03g01248 03 56775876 56778604 Car02g01313 02 39144374 39147570 ECH