Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01229 ATGCTTCAGATCCGTCTTAGCAAGACTCCAGCCTCTGAAGGGTCGGCTGGGGTGAAGCAATCACCTGTCGAGACTGTTACAGTTGCGTGCCCTGACCATCTAGTCCTTGCTGATCTTCCTGTTGCAAAGGGCATTGGTACAGCTACTTCTGCTTCCCTTGTTAGGACTTTGGGCCGTAGATCCCGTCGCCAGCTTGGTGAACGAGTGCATTTCTGTGTTCGCTGTGATTTCCCGATTGCTATTTATGGAAGGCTGAGCCCTTGTGAGCATGCTTTCTGTCTCGATTGTGCTAGAAGTGATTCATTGTGCTACCTGTGTGACGAACGTATCCAGAAGATTCAGACGATCAAAATGATGGAAGGAATCCTAATATGTGCAGCTCCTCATTGTCTCAAGACATTCTTGAAGAAGGCTGATTTTGAATCTCATATTCAGGACAGCCATGCCAATCTTGTTCGCACCAATGCAGATAAAGAAGACGGAAATGAGTCGGAGGCACAAAGTGTTAGGCAACCTACAGCCTCAGATTCCACTGCTAGAGGCCCTCAAAGACAAGTTTTTTCTCCAGGTCCAAATTCCCAACAACATGATCAGGAAGACAGAACTCGTCGGCAACCAGGAAGAGATCAAGCTCCTTCAAGGCCAACAATGCAACAAAAGCCACAATTTTTCGGTCAACAACATCACCCTTCAGATAGCATGTCTGGTTCTGTTGGAGGCATACAGCAGGGCTTTCACCAACAAAGTTTTGACATGCAGCATCCCCCACAACAAGAACCTTCCCAGTTTTCTGATAGGCAACAACCGGTTGGTCCAGATGCCTCATTTTCCGAGTACCCAACAATGCACCCTTCACAACCCTCCAATGTTCCGCCCCACTCAAACCCAATGCTGAACCCACCCGTGCCATTTGGTTATCCTCCTTACCAGCAAGATCGAGCTCAACCATTTTATGCTGCTCCCTATGATATGCCTAGGCAGGATTCAGCTTCTGATATAGGTGGCGACCCGAACTCATTAATGGGTTTCCAACAAGGTGGCCCAAATGCCCAAAATTTTCAAGGTAACTATCCCCAGCCCTGGAATGCCGGGGCTGCCGGTGTTCCTTTTGAACAATCACAAGGTGGCAGTGGTATGGTTGTGGATCCAAGGGATACCAAAGGTGTATTGGCACCACAGCCGATGCCCCTCccaccaccaccgccacctccagcacACATGTCACATTTGAAACAAAACTACTATTCCGGTGATCATGGAGATGGCCAGGGTTATGGTTGGCAGCATGATAGCCGCGATGGCTTTAGTGGCCAAGGCTGA 1320 0.4773 MLQIRLSKTPASEGSAGVKQSPVETVTVACPDHLVLADLPVAKGIGTATSASLVRTLGRRSRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSLCYLCDERIQKIQTIKMMEGILICAAPHCLKTFLKKADFESHIQDSHANLVRTNADKEDGNESEAQSVRQPTASDSTARGPQRQVFSPGPNSQQHDQEDRTRRQPGRDQAPSRPTMQQKPQFFGQQHHPSDSMSGSVGGIQQGFHQQSFDMQHPPQQEPSQFSDRQQPVGPDASFSEYPTMHPSQPSNVPPHSNPMLNPPVPFGYPPYQQDRAQPFYAAPYDMPRQDSASDIGGDPNSLMGFQQGGPNAQNFQGNYPQPWNAGAAGVPFEQSQGGSGMVVDPRDTKGVLAPQPMPLPPPPPPPAHMSHLKQNYYSGDHGDGQGYGWQHDSRDGFSGQG 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01229 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Car03g01229 439 MobiDBLite consensus disorder prediction 392 407 - -
Car03g01229 439 ProSitePatterns Zinc finger RING-type signature. 88 97 IPR017907 -
Car03g01229 439 MobiDBLite consensus disorder prediction 371 439 - -
Car03g01229 439 MobiDBLite consensus disorder prediction 153 298 - -
Car03g01229 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 414 IPR040383 GO:0016567|GO:0061630
Car03g01229 439 MobiDBLite consensus disorder prediction 209 271 - -
Car03g01229 439 MobiDBLite consensus disorder prediction 166 195 - -
Car03g01229 439 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
Car03g01229 439 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Car03g01229 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 414 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01229 1 435 C2H2 Transcription Factor Family AT5G01160 44.248 8.85e-104 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01229 K15685 - gmx:100817582 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01229 03 56259618 56267059 Car03g01229 03 56259618 56267059 ECH