Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01221 ATGGATGAGAATTATCTCTACACCTGCTTCGGTCAAACCGGCGAGGTAACATCTCTAAAAGTGATTAGGAATAAGCAAACTAGTCAATCAGAAGGTTATGGTTTTATCGAGTTTAATTCTCGTGCTACTGCTGAGAGAATGCTTCAAACATATAATGAAGCCATTATGTCGAATGGTGGCCAGAGCTACAGATTGAATTGGGCAACATTCAGTGCTGGGGAGAGGTCATCTCGGCAGGATGATGGTTCTGATCACACCATTTTTGTTGGTGATTTGGCTGTTGATGTTACTGATTACCTTCTTCGGGAGACTTTTAGGGCTCGTTATAACTCGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACTGGTCGGTCTAAGGGTTATGGTTTTGTTAGATTTGCTGATGAGAGTGAACAAATGAGGGCTATGACTGAGATGCAAGGGGAGACTTTTAGGGCTCGTTATAACTTGGTGAAGGGGGCAAAAGTTGTGATTGATAGGCTTACTGGTCGGTCTAAGGGTTATGGTTTTGTTAGATTTGCTGATGAGAATGAACAAATGATGGCTATGACTGAGATGCAAGGGGTTCTTTGTTCAACAAGGCCCATGAGGATTGGACCAACCACTAATAAAAATCATGCTGCCACCACTCAGCAGCCGAAAGCTTCATATCAGAACTCTCAAGGTGCACAAAGCGAGAATGATCCAAATAATACAACTATTTTTGTTGGCAATTTGGATCCTAATGTCGCTGATGATCATTTGAGGCAAGTTTTCAGCCAATATGGTGAATTATTACATGTGAAGATTCCATCAGGCAAGCAATGTGGATTTGTCCAATTTTCAGACATGGCTAAGCGGGAAAGAGGTATCACAATTGACATTGCTCTGTGGAAGTTTGAGACAACTAAGTATTACTGCACTGTCATTGATGCCCCCAGACACAGAGATTTCATTAAGAACATGATTACTGGAACATCCCAAGCTGATTGTGTTGTCCTTATCATTGATTCCACTACTGGTGGTTTTGAAGCTGGTATTTCTAAGGACGGTCAGACCCGTGAACATGCTCTCCTTGCTTTCACTCTTGGTGTGAAGCAAATGATTTGTTGTTGTAACAAGATGGATGCCACTACTCCCAAGTACTTTAAGGCTAGAAACAAAAAATGTGGGACAAAAATCACTCAATATTCAACAGAAACCTTGGATGAAGTAGAGATACGAGAGTTGCTCATTGATCACGTTGGTCATCGTTGTTGTTGGGGTAGCCGTCCTGCTCGAACATGGAAGATTCATGCAGTAGAAGACTGTAATGTTTATGTTGGAACTCTGGATACGTTTACAGAAGAAAGAGAGATCGTAAAAGAAACAGAACCATACCTTGGTGGCAGTATCGATGGAAAGGATAATGGACCTGAACTTAGTGTTTGGGAATTGGATCTAAGGTCTCAGTTCCCTTTTCTATTTGTACCCTTCAGAGAAGTTCTGGATTTACATCTCAAAGTTCACAAATAA 1518 0.415 MDENYLYTCFGQTGEVTSLKVIRNKQTSQSEGYGFIEFNSRATAERMLQTYNEAIMSNGGQSYRLNWATFSAGERSSRQDDGSDHTIFVGDLAVDVTDYLLRETFRARYNSVKGAKVVIDRLTGRSKGYGFVRFADESEQMRAMTEMQGETFRARYNLVKGAKVVIDRLTGRSKGYGFVRFADENEQMMAMTEMQGVLCSTRPMRIGPTTNKNHAATTQQPKASYQNSQGAQSENDPNNTTIFVGNLDPNVADDHLRQVFSQYGELLHVKIPSGKQCGFVQFSDMAKRERGITIDIALWKFETTKYYCTVIDAPRHRDFIKNMITGTSQADCVVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYFKARNKKCGTKITQYSTETLDEVEIRELLIDHVGHRCCWGSRPARTWKIHAVEDCNVYVGTLDTFTEEREIVKETEPYLGGSIDGKDNGPELSVWELDLRSQFPFLFVPFREVLDLHLKVHK 505
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01221 505 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 288 505 IPR000795 GO:0003924|GO:0005525
Car03g01221 505 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 1 149 - -
Car03g01221 505 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 150 291 - -
Car03g01221 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 242 285 IPR000504 GO:0003723
Car03g01221 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 2 55 IPR000504 GO:0003723
Car03g01221 505 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 154 IPR000504 GO:0003723
Car03g01221 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 171 IPR000504 GO:0003723
Car03g01221 505 Gene3D - 1 69 IPR012677 -
Car03g01221 505 MobiDBLite consensus disorder prediction 206 237 - -
Car03g01221 505 CDD RRM1_SECp43_like 1 71 - -
Car03g01221 505 SUPERFAMILY RNA-binding domain, RBD 1 152 IPR035979 GO:0003676
Car03g01221 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 70 IPR000504 GO:0003723
Car03g01221 505 SUPERFAMILY RNA-binding domain, RBD 155 224 IPR035979 GO:0003676
Car03g01221 505 SMART rrm1_1 241 302 IPR000504 GO:0003723
Car03g01221 505 SMART rrm1_1 86 160 IPR000504 GO:0003723
Car03g01221 505 SMART rrm1_1 1 66 IPR000504 GO:0003723
Car03g01221 505 Gene3D - 287 417 IPR027417 -
Car03g01221 505 PRINTS GTP-binding elongation factor signature 289 297 IPR000795 GO:0003924|GO:0005525
Car03g01221 505 PRINTS GTP-binding elongation factor signature 309 319 IPR000795 GO:0003924|GO:0005525
Car03g01221 505 PRINTS GTP-binding elongation factor signature 325 336 IPR000795 GO:0003924|GO:0005525
Car03g01221 505 PRINTS GTP-binding elongation factor signature 369 378 IPR000795 GO:0003924|GO:0005525
Car03g01221 505 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 1 149 - -
Car03g01221 505 CDD RRM2_SECp43_like 84 210 - -
Car03g01221 505 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 150 291 - -
Car03g01221 505 Pfam Elongation factor Tu GTP binding domain 286 396 IPR000795 GO:0003924|GO:0005525
Car03g01221 505 Gene3D - 154 207 IPR012677 -
Car03g01221 505 Gene3D - 84 153 IPR012677 -
Car03g01221 505 Gene3D - 224 286 IPR012677 -
Car03g01221 505 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 284 386 IPR027417 -
Car03g01221 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 162 211 IPR000504 GO:0003723
Car03g01221 505 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 240 298 IPR000504 GO:0003723
Car03g01221 505 SUPERFAMILY RNA-binding domain, RBD 223 286 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01221 Car-Chr3 56162306 56166059 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01221 286 398 Eukaryotic Initiation Factors Gene Family AT1G07930 87.611 5.36e-64 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01221 - - cam:105852200 624.394