Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01210 ATGTCAACTTTGGAGATGACCCATGTTGATTTAGAACAAGGAAATCATCCTAGTAGTATTGTTGTTGGAAGTGATGTGAGTGGTGAAGGTAGTTTATGTTTCTCTGATGCTGATGATGGTACTTCAAGCTATTCACGTTTCTATTCAACAAATGGTGGTTCATATGATGATTACAGTTTTTCTTGTGTTTCTGATCCTGAGCTTGGTGGAGGTGTTCATGATGATGATTCAGGGAGAGTTTCTTCTGTCACTGATTGTTCTGTTGAGGTTGAAATTAGAATTGGGGTTCCTGAGATTAAGGTGCATTTGTCTAAAGTGGAGAAAGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGAAAGTCATGAATCTGGTCCTCCTATTGAATTGGGTTGTTCTTGTAAGGATGATTTAGCTGCTGCTCATAAAAATTGTGCTGAAACTTGGTTCAAGATTAAGGGAAATAGGACCTGTGAAATTTGTCATTCCGTTGCGCGGAATGTTTACAGTGCAAACGAGGAATCAGCGGAGAATGTGATTGACAATAACAATGCTATTGCATCATCCACACTCTCAACAGCTGCTCCTTCATCAGAAACTCAAAGATTTTGGCACGGCCATCGCTTCTTGAATTTTCTTCTTGCTTGTATGGTTTTCGCATTTGTAATATCGTGGCTTTTCCACTTTAATGTGCCGTCATCGTAG 705 0.3972 MSTLEMTHVDLEQGNHPSSIVVGSDVSGEGSLCFSDADDGTSSYSRFYSTNGGSYDDYSFSCVSDPELGGGVHDDDSGRVSSVTDCSVEVEIRIGVPEIKVHLSKVEKDCRICHMGLESESHESGPPIELGCSCKDDLAAAHKNCAETWFKIKGNRTCEICHSVARNVYSANEESAENVIDNNNAIASSTLSTAAPSSETQRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01210 234 CDD RING_CH-C4HC3_MARCH 110 162 - -
Car03g01210 234 Pfam RING-variant domain 110 161 IPR011016 GO:0008270
Car03g01210 234 SMART ringv_2 109 162 IPR011016 GO:0008270
Car03g01210 234 ProSiteProfiles Zinc finger RING-CH-type profile. 102 168 IPR011016 GO:0008270
Car03g01210 234 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 98 173 IPR013083 -
Car03g01210 234 PANTHER ZINC FINGER, RING-CH-TYPE 5 233 - -
Car03g01210 234 PANTHER OS01G0850200 PROTEIN 5 233 - -
Car03g01210 234 SUPERFAMILY RING/U-box 107 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01210 Car-Chr3 55889772 55893887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01210 76 234 C3H Transcription Factor Family AT5G05830 61.250 2.96e-68 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01210 - - gmx:100808666 375.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01210 03 55889772 55893887 Car02g01662 02 45567262 45570055 ECH
Car03g01210 03 55889772 55893887 Car03g01210 03 55889772 55893887 ECH