Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01203 ATGGGTGGTGTTGCATGGACAGAAGAAGAAGATCACTTGCTTAAGAAATGCATACAACAATATGGAGAAGGAAAGTGGCATAGGGTTCCTCTATTAGCTGGTCTGAACAGGTGCAGAAAGAGTTGTAGGCTAAGATGGTTGAACTATCTCCGTCCTAACATCAAGAGAGGAAACTTTGCTGAGGAGGAAGTTGAAATGATTGTTAAACTCCACAAATTATTAGGCAATAGGTGGTCCCTGATTGCAGGAAGGTTACCAGGAAGAACTGCAAATGATGTGAAAAACTATTGGAATTGTCATCTAAGCAAAAAACTAAATGCTCAAGAAGCATCTGAAGATAAAGAATTATCCAAAGATGTTCAAATTATTAGGCCACAAGCAAGAAACATTGGTTCAACCTCAATGAAGAGAAGGAGTCTAGGAGAGTCACAAACTGACCAAGTAGTAGTTCAACAAGAGAGTGGCATAACATTGGATGATGCTGATGGAAAGAACCATATGATTGAATCACAACAAGACATGATTTATTCATGTTTGGACCAACAAGGTATGGTTGGTGATTTTCCAATGGATTTTCAATTAGAAGAAGGATTTGAAGCTATGGTGAGTAGTGGTGAAGGTAGTAGTAGTCAATGGAATTGGGATGATTTGCTCTTAGATATGGATCTTTATAATGATTTTTCCTCTTAG 690 0.3812 MGGVAWTEEEDHLLKKCIQQYGEGKWHRVPLLAGLNRCRKSCRLRWLNYLRPNIKRGNFAEEEVEMIVKLHKLLGNRWSLIAGRLPGRTANDVKNYWNCHLSKKLNAQEASEDKELSKDVQIIRPQARNIGSTSMKRRSLGESQTDQVVVQQESGITLDDADGKNHMIESQQDMIYSCLDQQGMVGDFPMDFQLEEGFEAMVSSGEGSSSQWNWDDLLLDMDLYNDFSS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01203 229 SMART sant 55 103 IPR001005 -
Car03g01203 229 SMART sant 2 52 IPR001005 -
Car03g01203 229 Pfam Myb-like DNA-binding domain 5 50 IPR001005 -
Car03g01203 229 Pfam Myb-like DNA-binding domain 56 98 IPR001005 -
Car03g01203 229 SUPERFAMILY Homeodomain-like 5 97 IPR009057 -
Car03g01203 229 Gene3D - 4 55 - -
Car03g01203 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 51 105 IPR017930 -
Car03g01203 229 ProSiteProfiles Myb-like domain profile. 51 101 IPR001005 -
Car03g01203 229 Gene3D - 57 127 - -
Car03g01203 229 PANTHER MYB TRANSCRIPTION FACTOR 5 226 - -
Car03g01203 229 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 5 226 - -
Car03g01203 229 ProSiteProfiles Myb-like domain profile. 6 50 IPR001005 -
Car03g01203 229 CDD SANT 58 101 IPR001005 -
Car03g01203 229 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 50 IPR017930 -
Car03g01203 229 CDD SANT 5 50 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01203 Car-Chr3 55810674 55814408 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01203 5 131 MYB Transcription Factor Family AT1G66370 59.854 2.39e-57 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g01203 Myb_DNA-binding 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01203 K09422 - gmx:100798101 346.665