Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01190 ATGGCTGAGGAGGGTTTTGAACATTACCATATTCCACAACAAAGTAGAAGAGAAAAGCTTAGAATTTTATCTCAAAATCAAACAAATTTTGTTGAATCATCTTCCAATTCTCTTCACCCTAATTCTTTACCTTTACCTTCTCTCTACGATCCTTCACTCATTTCTTCCAATTTCATGATGGGATTTGGAGGAGTTGTCAACAGTTCTTCTTCCCAACTAAACTCACCAATTGACCCTTTTGTTTATCAAGCTCAAAATCTTCGTGAATTCAATCATGGGTATACAAATGAAGGTGGTAGTAGTAGTAATAGTGAAGTAATGTTGTTAAAGTCTGAACCTTTATCATTGTCTTTGTCATCAAACAAAAATAATCAAAATCAGGTGAATTTTCAGCGATTTGGGTCGGTTATTTATGGTGGTGGTTGTGAAGTTTCGAGAAATACGGTTCCTTTAGGACCATTTACGGGTTATGCGTCGATTTTGAAGGGATCGAGGTTTTTGAAACCAGCACAGCAATTGTTGGATGAGATATGTGATGTTGGGGTTAGTGGAATTTGTGGTGAGAAAATTGCTGTTGATGATTCTTTGATGGatagtaatggtcaagatagtggaattgttaatggtgttgatgatggaaatgAGGGTAGAAAGAATAAGTCTAGATTATTAACCATGCTTGATGAGGTTTGCAGGAGGTACAGACAATACTATCAGCAGATTCATGCAGTAATAACTTCATTTGAATATGTATCAGGCCTCGGTAATGCAGCCCCATATGCAAGTTTGGCTCTAAATGCCATGTCCAAGCATTTTAGATGCTTGAAGAACGTGATAACTGACCAGCTTCGGTTTATCAGTAAGTCTAATTTTCAGATAAGCAACAGTAGAAAGGATGAATCGCCAAGGTTTCGCAACAGTGACGCAGCCCCTTACAGTCAAAGGCCAGGGTTTCTTGAGCATGTCCAACCACCTGTTTGGAGACCTCAACGAGGACTCCCTGAGCGTGCTGTGAGTGTTCTCAGGGCATGGTTGTTTGAACACTTTCTGCACCCGTACCCTACTGATACTGACAAGATAATGTTAGCAAAACAAACCGGTCTATCTCGTAACCAGGTGTCTAATTGGTTTATAAATGCAAGAGTGAGACTATGGAAACCAATGGTAGAAGAGATACACATGCTTGAATCACAACAAACTCAAAAGGAACCACAAAGAGATGAGAATCTATCTACCTCCACAGACAAATTTCAGTTACCTTCAAATAACATCATTGCACAGAATCCATGTAACTCCACAGACAAATTTCAGAGTGTCGCCTATAAACGGACTAGAAACGAACTTTCAAATATGTCGGTGCTGAATCAACAAGTTGGTAGTAATGGAGTGAGCATGGGGAATAACGTTGCAACGAGCAATAATGGTGTCTCTCTGACACTCGGTCTTCATCAGAATCATGGTATTGGGTTATCCGAGCCGTTTAACATGAGTGCTGCTCAGCGTTTTGGCCTTGCACTTCAAACTGATAGCTACGTCACGAGTAATTTTCAATCACAGAATAGACAATTTGGTAGAGACCTTATTGGAGGGCAACTTTTGCATGACTTTGTAGGGTGA 1617 0.3878 MAEEGFEHYHIPQQSRREKLRILSQNQTNFVESSSNSLHPNSLPLPSLYDPSLISSNFMMGFGGVVNSSSSQLNSPIDPFVYQAQNLREFNHGYTNEGGSSSNSEVMLLKSEPLSLSLSSNKNNQNQVNFQRFGSVIYGGGCEVSRNTVPLGPFTGYASILKGSRFLKPAQQLLDEICDVGVSGICGEKIAVDDSLMDSNGQDSGIVNGVDDGNEGRKNKSRLLTMLDEVCRRYRQYYQQIHAVITSFEYVSGLGNAAPYASLALNAMSKHFRCLKNVITDQLRFISKSNFQISNSRKDESPRFRNSDAAPYSQRPGFLEHVQPPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQTQKEPQRDENLSTSTDKFQLPSNNIIAQNPCNSTDKFQSVAYKRTRNELSNMSVLNQQVGSNGVSMGNNVATSNNGVSLTLGLHQNHGIGLSEPFNMSAAQRFGLALQTDSYVTSNFQSQNRQFGRDLIGGQLLHDFVG 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01190 538 SUPERFAMILY Homeodomain-like 329 394 IPR009057 -
Car03g01190 538 MobiDBLite consensus disorder prediction 296 315 - -
Car03g01190 538 SMART HOX_1 327 391 IPR001356 GO:0003677
Car03g01190 538 CDD homeodomain 327 388 IPR001356 GO:0003677
Car03g01190 538 Pfam Associated with HOX 160 280 IPR006563 -
Car03g01190 538 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 78 515 - -
Car03g01190 538 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 78 515 - -
Car03g01190 538 Pfam Homeobox KN domain 344 383 IPR008422 GO:0003677|GO:0006355
Car03g01190 538 ProSiteProfiles 'Homeobox' domain profile. 324 387 IPR001356 GO:0003677
Car03g01190 538 SMART prehox3 155 281 IPR006563 -
Car03g01190 538 Gene3D - 330 392 - -
Car03g01190 538 MobiDBLite consensus disorder prediction 396 416 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01190 Car-Chr3 55504582 55509716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01190 4 538 Homeobox Transcription Factor Family AT5G02030 44.463 3.82e-126 379
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Car03g01190 POX 1.9e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01190 - - mtr:MTR_7g065050 704.131
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01190 03 55504582 55509716 Car03g01190 03 55504582 55509716 ECH