Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01188 ATGTTGTATTCTTGTTGCAGTTACCTTATTGATACTGACAAGATAATGTTAGCAAAACAAACCGGTCTATCTCGTAACCAGGTGTCTAATTGGTTTATAAATGCAAGAGTGAGACTATGGAAACCAATGGTAGAAGAGATACACATGCTTGAATCACAACAAACTCAAAAGGAACCACAAAGAGATGAGAATCCATCTACCTCAACAGACAAATTTCAGTTACGTTCAAATAACAACATTGCAGAGAATCCATGTAACTCCACAGACAAGTTTCATAATGTCGCATATAAACGGACTAGAAACGAACTTTCAAATATGTCGGTGTTGAATCAACAAGTTGGTAGTAATGGAGTGAGCATGGGGAGTAACGTTGCAACGAGCAATAATGGTGTCTCTCTGACACTCGGTCTTCATCAGAATCATGGTATTGGGTTATCAGAGCCGTTTAACATGAGTGTCGCCCAATGTTTTGGCCTTGCACTTCAACCTGATAGCTACGTCATGAGTACTTTTCAATCACAAAATAGACAATTTGGTAGAGACCTTATTGGAGGGCAAATTTTGCATGACTTTGTAGGGTGA 582 0.39 MLYSCCSYLIDTDKIMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQTQKEPQRDENPSTSTDKFQLRSNNNIAENPCNSTDKFHNVAYKRTRNELSNMSVLNQQVGSNGVSMGSNVATSNNGVSLTLGLHQNHGIGLSEPFNMSVAQCFGLALQPDSYVMSTFQSQNRQFGRDLIGGQILHDFVG 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01188 193 Pfam Homeobox KN domain 12 38 IPR008422 GO:0003677|GO:0006355
Car03g01188 193 Gene3D - 6 47 - -
Car03g01188 193 ProSiteProfiles 'Homeobox' domain profile. 1 42 IPR001356 GO:0003677
Car03g01188 193 MobiDBLite consensus disorder prediction 59 79 - -
Car03g01188 193 CDD homeodomain 3 43 IPR001356 GO:0003677
Car03g01188 193 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 171 - -
Car03g01188 193 MobiDBLite consensus disorder prediction 51 79 - -
Car03g01188 193 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 8 171 - -
Car03g01188 193 SUPERFAMILY Homeodomain-like 5 49 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01188 Car-Chr3 55411625 55414161 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01188 8 193 Homeobox Transcription Factor Family AT5G02030 46.698 4.45e-39 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Car03g01188 Homeobox_KN 1.5e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01188 - - cam:101496191 378.637