Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01141 ATGTCTCAATCTACTCCAACTCAAGAGTTGGTTGCTAAGGATCTTCATAATTACGAATGGCACTTTAAGCATATATTTAGAGGTCAACCGCGTCGACACTTACTAACAACTGGATGGAGTACTTTTGTGACATCCAAAAGATTAGTTGCTGGAGATACTTTTGTGTTTCTGAGAGGAAACAATGGAGAATTACGCGTTGGAGTGAGGCATCTCGCTTCGCCGCAGAGCTGCATGCCTTTATCTGTGATTTCTGGTCAGAGCATGCACCTTGGAGTCCTTGCAACTGCATCTCATGCTGTTGCAACCCAAACTCTTTTTGTAGTATACTATAAGCCAAGGATGAGCCAGTTTATTGTAAGTGTGAACAAGTTCATGGAAGCTATGAACCAAAAATTTAGTGTTGGAATGAGGTTCAAGATGAGTTTTGATGGAGATGATTCACCTGAGACCGACAAAAGATTTTCTGGCACAATAATTGGAGAAGAGGATATTTCTTCACATTGGTTGAATTCAAAATGGAGATCACTCAAGGTTCAATGGGATGAGCCTGCATCTATTCCAAGACCTGATAGAATTTCACCATGGGAGATCGAACCGCTTTCGGCTTCTGTTCCTACATCTGTTCAACCTCCTCCTCCTGTAAAATATAAAAGGCCTAGACTACCTAGTGAAGTTCCAGATCTTGGAGACACGGCACTAGGTGACTCTGCTTACTGGGAAGCTGGGTTGACACAATCAGATATAACACAAGTTAATGTTATGTCTGAAAACAAAAGGAGTGACAATATGCATATATGGCATCATATACAAACTGATAATAACAAAATCAGCAGAAATAGTATATCGAGGAATCCGACAGATGGAAGTTGGCTATCTTCTCCTCATTCTAGTTGTCCTTCTCATTTGTGTCAAGACGCGTCTGACGATAGCAAGAATGTCTCGGTCTCACCTTGGCCTATTTCAAAAACAAACTCAGAAATACCGAACAATGATCGTTTGATTAATGAAGTTGACAAGGAGAACAAAATAGAGGCTGCTACAAGCTGTAGATTGTTTGGCATTGACCTTAATCAGAATGCAGCAAATGCATATGGAGTCACCTCTGAAGGATGTGCTGTCACCCCTTTGTCAAGAACTGATGCAAACCATAATATGCCTGATATCTCAAAGGCTTCAAAAGAAATGATACAAGAACAGCTACAAGTATCACCAAAAGAAACTCCCAGCAAGCAAATCAATAGCAGAAGTTGTACTAAGGTTCAAATGCAGGGCGTTGCGGTGGGTCGTGCGGTGTACTTGACCGCGTTGGATGGATATAATCAACTTATAGATGAACTGGAGAAGCTTTTTGACATAAAGGGACAACTCCAAGTAAGGAATAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCGTGGCCGGAATTCTGCAATATGGTGAGAAGAATTTTCATTTGTTCAAGCCAAGATGTTAACAAAATGAGCTCAGGGACTAAATTGCCTATCTCATCAATAGAAGAGACTGTAATAAGCTCAGACACAACTGAGACATGA 1578 0.4094 MSQSTPTQELVAKDLHNYEWHFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGNNGELRVGVRHLASPQSCMPLSVISGQSMHLGVLATASHAVATQTLFVVYYKPRMSQFIVSVNKFMEAMNQKFSVGMRFKMSFDGDDSPETDKRFSGTIIGEEDISSHWLNSKWRSLKVQWDEPASIPRPDRISPWEIEPLSASVPTSVQPPPPVKYKRPRLPSEVPDLGDTALGDSAYWEAGLTQSDITQVNVMSENKRSDNMHIWHHIQTDNNKISRNSISRNPTDGSWLSSPHSSCPSHLCQDASDDSKNVSVSPWPISKTNSEIPNNDRLINEVDKENKIEAATSCRLFGIDLNQNAANAYGVTSEGCAVTPLSRTDANHNMPDISKASKEMIQEQLQVSPKETPSKQINSRSCTKVQMQGVAVGRAVYLTALDGYNQLIDELEKLFDIKGQLQVRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVNKMSSGTKLPISSIEETVISSDTTET 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01141 525 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 515 IPR044835 GO:0003677|GO:0006355|GO:0009725
Car03g01141 525 Pfam B3 DNA binding domain 7 69 IPR003340 GO:0003677
Car03g01141 525 Gene3D - 131 205 - -
Car03g01141 525 ProSiteProfiles B3 DNA-binding domain profile. 1 72 IPR003340 GO:0003677
Car03g01141 525 Gene3D - 411 503 - -
Car03g01141 525 PANTHER AUXIN RESPONSE FACTOR 1 515 - -
Car03g01141 525 ProSiteProfiles PB1 domain profile. 415 496 IPR000270 GO:0005515
Car03g01141 525 CDD B3_DNA 8 69 IPR003340 GO:0003677
Car03g01141 525 Pfam AUX/IAA family 399 500 IPR033389 -
Car03g01141 525 SUPERFAMILY DNA-binding pseudobarrel domain 2 99 IPR015300 -
Car03g01141 525 Gene3D - 1 71 IPR015300 -
Car03g01141 525 MobiDBLite consensus disorder prediction 205 219 - -
Car03g01141 525 MobiDBLite consensus disorder prediction 203 223 - -
Car03g01141 525 MobiDBLite consensus disorder prediction 276 324 - -
Car03g01141 525 Pfam Auxin response factor 96 177 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Car03g01141 525 SUPERFAMILY CAD & PB1 domains 411 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01141 Car-Chr3 53875279 53880566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01141 1 508 B3 DNA Binding Superfamily AT4G23980 55.405 7.63e-171 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Car03g01141 AUX_IAA 1.6e-05 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01141 K14486 - gmx:100779003 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01141 03 53875279 53880566 Car06g02659 06 34154363 34160109 PCT