Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01138 ATGAGAGCACACACCAATTCCACAAACCCATGTCTCAAAATTCTCATTTTTCTCATTCTACAAACTTTTCTACCATTCATGACCCATTTCAAAAACTTCAAATCTGAAGCCAAGATTCTAACTTTACCACTCAAATCACAAGTAATCCCATCTGGGTATCTTCCAAGACCACCAAACAAGCTTAGGTTTCATCACAATGTAAGTCTCACCGTCTCAATTACTGTTGGCACCCCCCCACAAAACGTGACCTTAGTCATTGACACAGGTAGCGAGCTTTCTTGGCTTCATTGCAGTAATAACACAACTAACCGGGTTTCATCCGACCCGTTTTTTAACCCTAATTTATCTTCTTCCTACACCCCCATTTCTTGCTCTTCCACCACCTGCACGACCCGAACCCGAGATTTCCCCATACCCGCTTCATGTGACTCCAACAATCATTGTCACGCTACTCTCTCATACGCAGATGCTTCTTCCTCTGAAGGGAACCTTGCATCTGATTCATTCGGGTTTGGAGGACCCATTAACCCGGGTATCGTATTCGGGTGTATGGATTCGAGTATTAGCACAAATTCCGATGGTGATTTCAATACAACCGGGTTAATGGGTATGAATCTCGGGTCACTTTCATTAGTTTCTCAACTCAAGATACCCAAATTCTCGTATTGTATATCGGGTTCGGATTTCTCGGGTATTCTTCTTCTCGGAGAGTCCAATATATCGTGGGTCGGGTCATTAAACTATACCCCTTTGGTTCAAATGTCCACTCCTTTACCCTATTTTGATCGGGCCGCGTATTCGGTTCGACTCATGGGAATTAAGGTTTCGGATAAATTACTAAATTTATCGAATATTATACTCGCTCCAGATCATACTGGAGCGGGTCAAACTATGTTTGATTTAGGTACTCAATTTACGTTTTTACTTGGGCCGGTTTATAGTATTTTAAGAGAAGAGTTTCTAAGTCAAACAAATAGTACTTTACGGGTAATGGACGATCCGAATTTTGCGTTTCAATTAGCAATGGATCTTTGTTATCGGGTCCCGTTGAACCAATCGAAATTACCCGAATTGCCTAGTGTTAGTTTAGTTTTTGATGGAGCCGAAATGAGGGTTTCGGGTGAACAAGTTTTATATGAGGTTCCAAGTGGAATTATAGGGAATGATTCGGTATATTGTTTCACATTTGGGAACTCGGATTTACTAGGTGTAGAGTCGTTCATCATTGGCCATCACCAACAACAGAATATGTGGATGGAGTTTGATCTTGTGAATTCAAGGGTTGGTTTGGCCCATGTACAATGTGATTTGGTGAGTCAGAAGGTGTTGGGCTATGGGTACTTAGGCCCACATGATTGA 1359 0.4187 MRAHTNSTNPCLKILIFLILQTFLPFMTHFKNFKSEAKILTLPLKSQVIPSGYLPRPPNKLRFHHNVSLTVSITVGTPPQNVTLVIDTGSELSWLHCSNNTTNRVSSDPFFNPNLSSSYTPISCSSTTCTTRTRDFPIPASCDSNNHCHATLSYADASSSEGNLASDSFGFGGPINPGIVFGCMDSSISTNSDGDFNTTGLMGMNLGSLSLVSQLKIPKFSYCISGSDFSGILLLGESNISWVGSLNYTPLVQMSTPLPYFDRAAYSVRLMGIKVSDKLLNLSNIILAPDHTGAGQTMFDLGTQFTFLLGPVYSILREEFLSQTNSTLRVMDDPNFAFQLAMDLCYRVPLNQSKLPELPSVSLVFDGAEMRVSGEQVLYEVPSGIIGNDSVYCFTFGNSDLLGVESFIIGHHQQQNMWMEFDLVNSRVGLAHVQCDLVSQKVLGYGYLGPHD 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01138 452 Pfam Xylanase inhibitor N-terminal 71 236 IPR032861 -
Car03g01138 452 Gene3D Acid Proteases 238 439 IPR021109 -
Car03g01138 452 SUPERFAMILY Acid proteases 70 436 IPR021109 -
Car03g01138 452 ProSiteProfiles Peptidase family A1 domain profile. 69 431 IPR033121 -
Car03g01138 452 PANTHER ASPARTYL PROTEASE-RELATED 15 442 IPR001461 GO:0004190|GO:0006508
Car03g01138 452 Pfam Xylanase inhibitor C-terminal 265 430 IPR032799 -
Car03g01138 452 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 84 95 IPR001969 GO:0004190|GO:0006508
Car03g01138 452 Gene3D Acid Proteases 62 237 IPR021109 -
Car03g01138 452 CDD pepsin_A_like_plant 70 435 IPR034161 -
Car03g01138 452 PANTHER ASPARTIC PROTEINASE PCS1 15 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01138 Car-Chr3 53699311 53701052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01138 71 436 Miscellaneous Gene Families AT1G77480 23.724 3.11e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01138 - - gmx:100813686 681.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01138 03 53699311 53701052 Car03g01138 03 53699311 53701052 ECH
Car03g01138 03 53699311 53701052 Car06g03611 06 67447616 67449661 ECH
Car03g01138 03 53699311 53701052 Car01g02598 01 51652247 51653669 ECH