Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01123 ATGCTGTTGGAAATGAAGGATAGGCAGCGGTGGAGAGCGGAAGAGGATGCATTACTCCGCGCTTATGTCAAACAGTACGGTCCTAGGGAATGGAACCTCGTGTCTCAGCGCATGAACACACCTCTTAATCGGGACGCAAAGTCGTGCTTAGAAAGGTGGAAGAATTACCTCAAGCCAGGCATTAAGAAAGGATCACTCACTGAAGAAGAGCAGCGTCTCGTTATTAGCCTTCAAGCAACACACGGAAACAAATGGAAGAAAATCGCCGCGCAAGTCCCCGGCCGCACTGCTAAGAGGTTAGGGAAGTGGTGGGAAGTATTCAAAGAAAAGCAACAAAGAGAAACAAAAGTGATTAACAGAAACGTCGACCCGATAAACGACAGCAAGTACGAACATATACTCGAGAGTTTCGCCGAGAAACTAGTGAAAGAGAGACCTTCACCTTCATTTGTTATGGCTGCTTCCAACAGTTCTTTTCTGCATACCGATGCGCAAGCGCCAACATCGACATTGTTACCTTCGTGGCTTTCAAATTCGAACAACACTGCACCTATTAGGCCACCTTCGCCATCAGTGACACTAAGCCTCTCTCCATCAACAGTGGCAGCGCCTCCCCCCTGGATGCGACCGGACAATACGCCACTTGTTTTAGGCAACGTAGCTCCTCACGGAGCCGTTCTAACTTTTGGCGAAAACTTGGTGATGTCCGAGTTAGTTGATTGCTGTAAGGAGTTGGAAGAAGTGCATCATGCATTGGCAGCACATAAGAAAGAGGCGGCGTGGAGGTTAAGCCGAGTGGAACTGCAGTTGGAATCGGAAAAGGCGAGTCGAAGGAGGGAGAAGATGGAGGAAATTGAAGCAAAGATAAAAGCTCTTAGAGAGGAACAATCGGTTGCGTTGGATAGAATCGAAGGAGAATATAGGGAACAGTTAGCAGGGCTGAAAAGAGATGCAGAAACCAAAGAACAGAAGTTGGCTGAACAATGGGCTGCAAAGCATTTGCGACTTACCAAGTTTCTAGAGCAAGTAGGGTGTAGATCAAGGCTTGCTGAACCTAATGGAAGATAA 1068 0.4757 MLLEMKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVISLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKVINRNVDPINDSKYEHILESFAEKLVKERPSPSFVMAASNSSFLHTDAQAPTSTLLPSWLSNSNNTAPIRPPSPSVTLSLSPSTVAAPPPWMRPDNTPLVLGNVAPHGAVLTFGENLVMSELVDCCKELEEVHHALAAHKKEAAWRLSRVELQLESEKASRRREKMEEIEAKIKALREEQSVALDRIEGEYREQLAGLKRDAETKEQKLAEQWAAKHLRLTKFLEQVGCRSRLAEPNGR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01123 355 ProSiteProfiles Myb-like domain profile. 58 108 IPR001005 -
Car03g01123 355 Coils Coil 265 302 - -
Car03g01123 355 PANTHER TRANSCRIPTION FACTOR AS1 5 355 IPR031055 GO:0005634|GO:0006351|GO:0010338
Car03g01123 355 CDD SANT 10 57 IPR001005 -
Car03g01123 355 SUPERFAMILY Homeodomain-like 8 102 IPR009057 -
Car03g01123 355 Gene3D - 8 62 - -
Car03g01123 355 ProSiteProfiles Myb-like domain profile. 3 57 IPR001005 -
Car03g01123 355 CDD SANT 67 108 IPR001005 -
Car03g01123 355 Gene3D - 66 129 - -
Car03g01123 355 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 5 355 - -
Car03g01123 355 Pfam Myb-like DNA-binding domain 11 71 - -
Car03g01123 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 112 IPR017930 -
Car03g01123 355 SMART sant 7 59 IPR001005 -
Car03g01123 355 SMART sant 62 110 IPR001005 -
Car03g01123 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 57 IPR017930 -
Car03g01123 355 Coils Coil 304 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01123 Car-Chr3 53175656 53178959 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01123 5 346 MYB Transcription Factor Family AT2G37630 66.027 1.54e-159 449
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Car03g01123 Myb_DNA-bind_6 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01123 K09422 - gmx:100819082 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01123 03 53175656 53178959 Car03g01123 03 53175656 53178959 ECH