Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01101 ATGGATAGCCACAAAGGTACTATATGGGTTGGTCTAGGAGTTGGTGTAGTTGTTGCATCAAGTTTCCTTATTTTAGGATGGTTTTGTATTTTAATGTGGAAAAGGGCTAAAATGAAAAAAGAAGATTCAACTTTTGACCTAAAAATGGATGATGAATTCCAAAAGGGAATAGGACCAAAAAGGTTTTGTTATAATAAATTGGCGAGTGCAACAGATAACTTTGAAGAATCACAAAAGATTGGGCAAGGTGGTTTTGGTGGTGTTTATAAAGGCTATTTAAAAGACATAGATTCAAATGTTGCTATAAAGAGAATATCAAGAGAATCCAAACAAGGAATAAAGGAATATGCAACTGAAGTGAAACTCATTAGTCAACTAAGGCATAGAAATTTAGTACAACTAATTGGTTGGTGTCATAGAAAAAAAGACTTACTCCTTATATATGAATTCATGCAAAATGGTAGCTTAGATTCACACTTATATCGCGGAAAAAGCGTATTAGCATGGCACATGAGGTACAACATTGCAATGGATTTAGCTTCAGCGTTGTTGTATCTTCATGAAGAATGGGAACAATGCGTGCTACATAGAGACATTAAATCAAGCAACATTATGTTGGACACAAATTTCAATGCTAAAGTCGGCGATTTCGGGTTGGCAAGACTAGTTGATCATGAAAAAGGCTCACAAACAACAGTTATAGCTGGTACAATGGGATATTTAGCACCTGAATATTTCACAACAGGTAAAGCTACAAAGGAATCTGATATATATAGTTTTGGAATTGTTTCATTGGAGTTAGTTAGCGGAAGAAAACCAGTTGATCTTAATGCAAAGGAAGACCAAATGGCTATATATGATTGGGTTTGGGAACTTTATAGATTAGGAAGGTTTGTTGAAGTTGTTGATACAAAACTTAGGGGTGTGTTTGATGAGATGAAAATGGAACGTTTAGTTGTTGTTGGTCTTTGGTGTGCTAATCCTAATTATTCATTAAGGCCAAGTGTTAGACAACTGATTCAAGTGCTTAAATTTGAAGCTGCTTTACCAATTCTACCCCTGCAAAAGATGAATGATTCAAGTTATTATGCTCCTACAAAAATGAACACAGTTTTTGGTCCAGTTTCTTCTTCCTCTGCAGTTTATTCATACCCGATCTGTGTCTAG 1167 0.3522 MDSHKGTIWVGLGVGVVVASSFLILGWFCILMWKRAKMKKEDSTFDLKMDDEFQKGIGPKRFCYNKLASATDNFEESQKIGQGGFGGVYKGYLKDIDSNVAIKRISRESKQGIKEYATEVKLISQLRHRNLVQLIGWCHRKKDLLLIYEFMQNGSLDSHLYRGKSVLAWHMRYNIAMDLASALLYLHEEWEQCVLHRDIKSSNIMLDTNFNAKVGDFGLARLVDHEKGSQTTVIAGTMGYLAPEYFTTGKATKESDIYSFGIVSLELVSGRKPVDLNAKEDQMAIYDWVWELYRLGRFVEVVDTKLRGVFDEMKMERLVVVGLWCANPNYSLRPSVRQLIQVLKFEAALPILPLQKMNDSSYYAPTKMNTVFGPVSSSSAVYSYPICV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01101 388 SUPERFAMILY Protein kinase-like (PK-like) 59 372 IPR011009 -
Car03g01101 388 CDD STKc_IRAK 80 344 - -
Car03g01101 388 ProSitePatterns Serine/Threonine protein kinases active-site signature. 194 206 IPR008271 GO:0004672|GO:0006468
Car03g01101 388 SMART serkin_6 74 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01101 388 ProSiteProfiles Protein kinase domain profile. 74 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01101 388 Pfam Protein kinase domain 74 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01101 388 PANTHER LECTIN RECEPTOR KINASE 8 383 - -
Car03g01101 388 PANTHER - 8 383 - -
Car03g01101 388 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
Car03g01101 388 Gene3D Transferase(Phosphotransferase) domain 1 151 364 - -
Car03g01101 388 Gene3D Phosphorylase Kinase; domain 1 59 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01101 Car-Chr3 52794871 52796037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01101 2 363 Receptor kinase-like Gene Family AT5G10530 54.521 3.33e-140 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Car03g01101 Pkinase 1e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01101 - - gmx:100814713 576.244