Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01093 ATGGCGGAAACCAATGCTGCCAATATTCTCCTTCACAACCTCATCAACATTTCCAACCAAATCTCTCAAATCTCCACCTTTAATTCCCTTATCAAAACACAATGCTTGGATCTCAGCCGTAGGATCACTTTCCTCATTCCTCTCTTTCAACACCTCCTTAACGACGTCGTTTCTGTGCCCTACCACGCTCTCGTTTCGCTCCAACAAGTCTTTCTCTCCGCCAAACAATTGCTCCTCTTTTGCTCCCAACCAAGCCAGCTCTACCTGATATTGGAAAGAGAGAAAATTAGGTGCAAATTCAATGATGTAGCTTCTCATTTTGAACAAGCTATAAGCGAGATTTCCTATGACAAACTAGATATTTCTGAGGAGCTCAAGGAGCAGGTTGCACTAGTGACTGCTCAGTTTAGAAGGGCCAAAGAGCATTTTGATCCACCTGGTCTTGAACTTTATGAGCACCTGCTGTCTATCTATAACCAGAACTCTGATGTGAATACTGAACACTCTGCACTACATTTAATCTGTGAGAAGCTACAATTTGTGAGTGTGGAGGATATCAAACAAGAGTCACTTGCTCTACATAAGATGATTGTTGATGGGGGTGGTTGTTTTGATAAAAGCACGCAGGGATTGTCGACGGTGCTGAAAAAAATTGAAGATTTTTTGTTGAAGGAATCTGAAAACATTGCTGTTTTGTCGAGTGTGGATTTACCTCCTCATATTGATGAGCCATGTGTGAAGTTAAATTGTCAGTTACCTGTTATGCCGGAGGAGTTTCGCTGCCCAATATCTCTTGAGCTAATGAAAGATCCTGTTATCATTTCCACTGGGCAGACATATGAACGCGCTTGCATAAAGAAATGGCTTGATTCAGGGCATGGAACATGTCCCATCACTCAGCAGATTCTTTCCAGCCCCATTCTCATACCTAACCATGTTTTATACAGCCTGATATCAAATTGGTGTGAGGCAAATGGAGTGGAACCACCTAAAAGGTTAGGAAACTTGCGGCTCTGTAAGGAAACATCAGACGGCTCTTCTGAATTTATAGATCTTGATACCTTAATGAGGAAACTTGCTTCTCGTGACATTGAGGATCAGCGTTGTGCAGCTGGGGAATTCCGCCTTCTTGCCAAACATGATAGTCTAAATCGAAAGTTGATTGCTGAAGCTGGTGCTATACCTCTCCTTGTTGATCTCCTCTTTGTGTCTGATGCTGGCATCCAGGAGAATGCGGTTACTGCTCTTCTCAACCTATCTATCTACGAAGATAACAAAGAGTGCATCATGGCTTCTGAGGCTGTGGCGGGGATCCTTCACGTGCTAGAAAATGGTAGTATGGTAGCTCGTGAAAATGCAGCAGCCACCTTTTTCAGCCTCTCGGCAGCAAACGAGAACAAAGTTGCAATTGGTGCATCTGGAGCAATCCAGGCGCTAGTTACTCTCTTGTGCGAAGGAAGTCAAAGAGGAAAGGTCGATGCTGCCGCAGCGCTATTCAATTTGTGTTTTTACCAAGCTAACAAAGGACGTGCTATTAAGGCTGGTATTGTGCCCAAGTTAATAGAAATGTTAACGGAACCGGATGGACAGATGAGGGACGAGGCATTGACAATCATGGCGATGTTAGTTACCCACCCTGATGGAAAAGCAGCAATTGGATCTATGAATGCTATTCCCACTTTCGTGGAAATTATCATTAATGGATCTTCTAGGAACAAAGAGAATGCAACTTCAGTGCTTGTGCACGTCTGTCGTGGAGATCCACTACACCTGTCAACTGTTGCTTCACTTGGAGTGATCAATCCTCTCTTGGAATTGGCGGAAAATGGTTCGGAAAGGGCCAATCGGAAAGCTGCAGAGCTTCTTGAGTTGTTAGGCATTTATAGACCAGTGTGA 1896 0.4388 MAETNAANILLHNLINISNQISQISTFNSLIKTQCLDLSRRITFLIPLFQHLLNDVVSVPYHALVSLQQVFLSAKQLLLFCSQPSQLYLILEREKIRCKFNDVASHFEQAISEISYDKLDISEELKEQVALVTAQFRRAKEHFDPPGLELYEHLLSIYNQNSDVNTEHSALHLICEKLQFVSVEDIKQESLALHKMIVDGGGCFDKSTQGLSTVLKKIEDFLLKESENIAVLSSVDLPPHIDEPCVKLNCQLPVMPEEFRCPISLELMKDPVIISTGQTYERACIKKWLDSGHGTCPITQQILSSPILIPNHVLYSLISNWCEANGVEPPKRLGNLRLCKETSDGSSEFIDLDTLMRKLASRDIEDQRCAAGEFRLLAKHDSLNRKLIAEAGAIPLLVDLLFVSDAGIQENAVTALLNLSIYEDNKECIMASEAVAGILHVLENGSMVARENAAATFFSLSAANENKVAIGASGAIQALVTLLCEGSQRGKVDAAAALFNLCFYQANKGRAIKAGIVPKLIEMLTEPDGQMRDEALTIMAMLVTHPDGKAAIGSMNAIPTFVEIIINGSSRNKENATSVLVHVCRGDPLHLSTVASLGVINPLLELAENGSERANRKAAELLELLGIYRPV 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01093 631 Coils Coil 604 624 - -
Car03g01093 631 Pfam U-box domain 256 325 IPR003613 GO:0004842|GO:0016567
Car03g01093 631 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Car03g01093 631 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Car03g01093 631 SUPERFAMILY ARM repeat 345 625 IPR016024 -
Car03g01093 631 SUPERFAMILY RING/U-box 255 331 - -
Car03g01093 631 CDD RING-Ubox_PUB 259 301 IPR045210 -
Car03g01093 631 Gene3D - 338 626 IPR011989 -
Car03g01093 631 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 392 434 IPR000225 GO:0005515
Car03g01093 631 PANTHER U BOX DOMAIN-CONTAINING 8 625 - -
Car03g01093 631 Pfam Armadillo/beta-catenin-like repeat 382 420 IPR000225 GO:0005515
Car03g01093 631 Pfam Armadillo/beta-catenin-like repeat 464 502 IPR000225 GO:0005515
Car03g01093 631 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 328 IPR013083 -
Car03g01093 631 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 8 625 - -
Car03g01093 631 SMART arm_5 504 544 IPR000225 GO:0005515
Car03g01093 631 SMART arm_5 545 585 IPR000225 GO:0005515
Car03g01093 631 SMART arm_5 587 627 IPR000225 GO:0005515
Car03g01093 631 SMART arm_5 463 503 IPR000225 GO:0005515
Car03g01093 631 SMART arm_5 381 421 IPR000225 GO:0005515
Car03g01093 631 Gene3D - 10 117 IPR036537 GO:0007166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01093 Car-Chr3 52573680 52579481 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01093 450 629 U-box Gene Family AT3G46510 29.834 4.43e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01093 - - var:108326899 785.023