Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01092 ATGGTTTATACTTCTCTCCCACCATATATGGATCCAGCCAACTGGCATCAACAGCAACCAAATCATCAAGTGGCTAACAATAGTTTCAACACTCCTCTTCTTATTCCATCACCACAACCTCAACCGTCGAACCTGACACCATCGCAGTCTCATGGAGGCTCGATCAGACCAGGTTCGATGGCAGATAGGGCCAGGATGGCTAACATACCTATGCAAGAGCCAGCACAAAAATGTCCAAGGTGTGATTCCACCAACACAAAGTTTTGCTACTTCAACAACTATAGTCTCTCGCAGCCCCGCCACTTCTGCAAGACCTGTAGAAGGTATTGGACAAGAGGCGGAGCCCTAAGAAGCGTTCCAGTCGGCGGAGGTTGCCGAAGAAACAAGAGGACTAAATCAAGCAACAACAACACCTCAAAGTCTCCGGTTAGCTCCGATCGCCAAACTAGCTCCGCAAACAATAACTCTCCCGCGGTCCTCAGTTCCCAGACGCCACCACCGATGAGATTCATGGCTCCATTACATCAACTCGGCGATCACATCGGTGAAATAGGGCTAAACTATGGTTTCTCTAGTCCAATGGGAGGAGTAGGTGACTTGAACTTTCATATAGGAAACTCTTTAGGTGGAGCAAGCGGAGGCGTTGGTAGCGGTGGTGTCACCAGTGCTAGTGGTGGTTCGGCTTCGATTTTACCCGTCGGTGGTTTCGAGCAATGGAGGATGCCACAAACTCACCAATTTCCCTTTTTATCTGGTCTAGAAGCTTCTTCTTCACATGGATTATTATATCCATTTGAAggtggtggtggtggtggAAATGATCAAGCACATGTATATGGTGGTGTGCCTAAGGTATTATCAACTTCTTCAGTGAAAATGGAAGAGAATCAATCTAGACAATTCTTGGGAATGATCAATAGTAATAATAACAACCCTAATAGTGAACAATATTGGAATGCTTCTGCTGGTGGTGCTACTTCAGCTTGGGCAGATCTTTCAGCTTTTAACTCTTCTAATTCAACTACCACCAATTCCAACTATAGGTCTTAA 1050 0.4476 MVYTSLPPYMDPANWHQQQPNHQVANNSFNTPLLIPSPQPQPSNLTPSQSHGGSIRPGSMADRARMANIPMQEPAQKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRTKSSNNNTSKSPVSSDRQTSSANNNSPAVLSSQTPPPMRFMAPLHQLGDHIGEIGLNYGFSSPMGGVGDLNFHIGNSLGGASGGVGSGGVTSASGGSASILPVGGFEQWRMPQTHQFPFLSGLEASSSHGLLYPFEGGGGGGNDQAHVYGGVPKVLSTSSVKMEENQSRQFLGMINSNNNNPNSEQYWNASAGGATSAWADLSAFNSSNSTTTNSNYRS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01092 349 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 9 340 - -
Car03g01092 349 MobiDBLite consensus disorder prediction 23 59 - -
Car03g01092 349 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 340 IPR045174 GO:0003700|GO:0006355
Car03g01092 349 MobiDBLite consensus disorder prediction 120 171 - -
Car03g01092 349 MobiDBLite consensus disorder prediction 128 163 - -
Car03g01092 349 Pfam Dof domain, zinc finger 75 130 IPR003851 GO:0003677|GO:0006355
Car03g01092 349 ProSitePatterns Zinc finger Dof-type signature. 78 114 IPR003851 GO:0003677|GO:0006355
Car03g01092 349 ProSiteProfiles Zinc finger Dof-type profile. 76 130 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01092 Car-Chr3 52517977 52519393 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01092 1 338 C2C2-Dof Transcription Factor Family AT2G37590 37.895 5.43e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Car03g01092 zf-Dof 2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01092 - - gmx:100796820 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01092 03 52517977 52519393 Car03g01092 03 52517977 52519393 ECH