Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01088 ATGGACTGTGGAGTTGAATTTCAAGATCTGCATGCAAAGTTGGTGAATGATACAGAACAAGTTGGTTTTGGAATTGGAACTGCAGAAGAAGAAGAAAATTTAGTGCAAGTTTCTGAGAGAGAGATGTGGCTTAATAATACTACTAATGATCAAGTTGATCATCTTTTAGGTATGAATGATGATGCATCTATGTTTTATGCTGATTTCCCTCCTTTACCTGATTTTCCATGCATGtcatcatcatcttcttcatcttcatcttctACACCattgaaaaccattgcatgttcaacaacaacaacaacaacctcttcttcttcctctgcttcttcttcctctgctgcttcttgggctattttgaaaTCAGAAGATGGAAACAAAATGAAGAACcatggttatgataataacatgcatcaaaatgatgtttcattattagatcatcatcatggtcatgCAAATACTTTGTCATCAACAGCTTCTATGGAGATTTCTcaacaacaacaacaacaacaacaTGAGAATAATAATATTGGTCTTTCTACCAATGATTGCATGGATGATGTTATTATGGAAACTTTTGGTTACATGGAGCTTTTAGAAGCAAATGAATTTTTTGACCCTTCTATTTTTCAAAATGAAGATAACCCTTTAGTTGATTTCACacaagaacaacaacaactacaagtgcaaccacaacATCAAGGAGAATATCATCATGAACATGCAATGGTAGTGAATGAGAGTGAAACTAAACAACAAGGGATTGAAGAAGATAATAATGTTTTTGTTTGTGATGTTGTAAATAATGAAGATGAGATACAAGGTGAAGAAGAAAGTGGATTTGATGGTGTAAATGATGAGATGAGTATGGTTTTTTTGGAGTGGCTTAAATCTAATAAAGATAGTGTATCAGCTAATGATTTGAGGAATGTGAAGCTTAAGAAATCAACAATTGAAAGTGCTGCAAGGAGATTAGGTGGTGGAAAAGAAGGGATGAAACAATTGTTGAAACTTATTCTTGAATGGGTTCAAACTAGTCATCTTCAAAACAAAAGACACAAACAGAACAACACAACAATGCTTTCAAATGTTCTTGTTCCTCAACAACAACAATTTCAAGATCCATGTCAAAACCAAAACACATTTGCACCTGAATCAACAAACACTTGTTTTAACCAAACACAATGGCTTATAGATCAAACACCTCTCATTGTAAATCCACCACAATTTTCATCACAACCAATGGTTGGATATGTTGGTAGTGACCCTTACACAAATGGTTCTGTTTCAAATAACCCTTATAACCAACAACATGTTACTAATGAATTTCAACACATGTTGGAATCAAATAATTCATGGGGTGGTTCTCAATTCACTATTGCAGCAGCATCACACTACAATCAATCATTTGGGGAGAATAATAGTAACAACAACAACAATAATATGCTGCAACATGGTGTGAGTTTTGGAGGATATGGAAACCAATATCCTTATCAGTTTTTTCATGGACCTGGTGATAGGTTAATGAGGTTAGGTCCTTCTGCTACAAAAGAAGCTAGGAAGAAAAGAATGGCAAGACAAAGAAGGTTTATGTCTCatcataggaatcataataataataataatcaacatcttctcaataatcatcaAGGTTCTGATCCACTTGGAAGATTAGGGGGTGATAATTGCACCAATCTTGTAGCTGCTGCTGGTTCACATGGAAATCCACCTAACTGGATGTATTGGCAAACTATGGCTGCTGGTGGGGGAGCTTCCTTGGCACCTGTTGTTCCGGCCGAGCCACCGCCGCCCCAGGTTCCGGTCGAGCGGTCCACCATGCAGGCGCAGAATTGTCATCAGGGTCGAAATGCATCGTCTGATAGGAGACAGGGTTGGAAGCCTGAGAAGAATTTGAGGTTCCTTCTACAAAAGGTGTTGAAGCAAAGTGATGTTGGAAGTTTGGGGAGAATTGTTTTACCAAAAAAAGAAGCAGAAACACATTTGCCAGAACTTGAGGCAAGAGATGGAATTTCAATTACAATGGAAGACATTGGAACTTCTAGAGTTTGGAATATGCGCTATAGCATCAGATATTGGCCAAACAATAAAAGCAGGATGTATTTGCTTGAGAACACTGGCGATTTTGTGAAAGCTAATGGACTCCAAGAGGGAGATTTCATAGTGATTTATTCTGATGTGAAGTGTGGCAAATTTATGATAAGAGGAGTGAAAGTGAGGCAACAACAAGGGGCAAAACCAGAGGCAAAGAAAGCAGGAAAATCACATAAAAACCAGCATGGGAATAATGCAACAAATTCAGCTGGAACAGCAGTGGCTAATAATGGCACGCAATCTTCACCAAAGCGAAAAAATGAAAAGATACTAAATTAA 2391 0.3308 MDCGVEFQDLHAKLVNDTEQVGFGIGTAEEEENLVQVSEREMWLNNTTNDQVDHLLGMNDDASMFYADFPPLPDFPCMSSSSSSSSSSTPLKTIACSTTTTTTSSSSSASSSSAASWAILKSEDGNKMKNHGYDNNMHQNDVSLLDHHHGHANTLSSTASMEISQQQQQQQHENNNIGLSTNDCMDDVIMETFGYMELLEANEFFDPSIFQNEDNPLVDFTQEQQQLQVQPQHQGEYHHEHAMVVNESETKQQGIEEDNNVFVCDVVNNEDEIQGEEESGFDGVNDEMSMVFLEWLKSNKDSVSANDLRNVKLKKSTIESAARRLGGGKEGMKQLLKLILEWVQTSHLQNKRHKQNNTTMLSNVLVPQQQQFQDPCQNQNTFAPESTNTCFNQTQWLIDQTPLIVNPPQFSSQPMVGYVGSDPYTNGSVSNNPYNQQHVTNEFQHMLESNNSWGGSQFTIAAASHYNQSFGENNSNNNNNNMLQHGVSFGGYGNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFMSHHRNHNNNNNQHLLNNHQGSDPLGRLGGDNCTNLVAAAGSHGNPPNWMYWQTMAAGGGASLAPVVPAEPPPPQVPVERSTMQAQNCHQGRNASSDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYSIRYWPNNKSRMYLLENTGDFVKANGLQEGDFIVIYSDVKCGKFMIRGVKVRQQQGAKPEAKKAGKSHKNQHGNNATNSAGTAVANNGTQSSPKRKNEKILN 796
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01088 796 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 790 - -
Car03g01088 796 MobiDBLite consensus disorder prediction 764 796 - -
Car03g01088 796 MobiDBLite consensus disorder prediction 158 179 - -
Car03g01088 796 Pfam B3 DNA binding domain 643 741 IPR003340 GO:0003677
Car03g01088 796 SUPERFAMILY DNA-binding pseudobarrel domain 641 740 IPR015300 -
Car03g01088 796 ProSiteProfiles B3 DNA-binding domain profile. 642 746 IPR003340 GO:0003677
Car03g01088 796 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 29 790 IPR044800 GO:0003700
Car03g01088 796 MobiDBLite consensus disorder prediction 746 796 - -
Car03g01088 796 CDD BfiI_C_EcoRII_N_B3 640 743 - -
Car03g01088 796 SMART B3_2 642 744 IPR003340 GO:0003677
Car03g01088 796 Gene3D - 638 760 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01088 Car-Chr3 52431811 52436496 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01088 18 785 B3 DNA Binding Superfamily AT3G24650 46.069 8.18e-166 495
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Car03g01088 B3 2.4e-17 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01088 - - gmx:100795226 822.772