Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01087 ATGGCAAGCCACACTCTCTATCTTCTTCTGTTCACACTTCTTCTCCCACTTTCCTTTGGTTCAAATGATGAACTTAACACCTTATTCTCATGGATAAATAGTTCAACCAAACTTCCTTCACCTCTAGACTCAAATCCATGCAAATGGTCATTCATAAAATGCTCTCAACAAAACCATGTAACAGAAATAAACATACAATCACTTCAACTAGCACTTCCTTTCCCTCCCAACATTTCATCACTTTCCAATCTTCAAAAGCTTGTCATCTCAGGTTCCAACCTCACTGGCACAATCTCACCTGACATTGCTAACTGTCCTCATCTCACACTCATTGATCTTAGCTCCAATAGTCTTGTTGGTGAAATTCCTTCAACTATTGGAAACTTAAAAAATCTTCAAGTTTTAGCCTTAAACTCTAACCAACTCAATGGAAAAATTCCAATTCAGCTTTGTGATTGTGTTAACCTCAAAACCCTAGACATTTTTGATAATAACCTTAGTGGAACACTTCCAAATGAACTTGGAAAGCTTTCAAATCTTCAAGTTATAAGAGCTGGTGGAAACAAAGACATTGTAGGGAAGATTCCTTATGAATTAGGTGAATGCATGAATTTAACAGTGTTAGGACTTGCTGACACTAAAATCTCTGGTTCATTACCTTCTTCATTAGGTAAACTAAGTATGCTTCAAACAATTTCAATTTATAGTACTTTACTTTCTGGTGAAATTCCTTCAGAAATTGGTAACTGTTCTGAGCTTGTGAACTTGTTTTTGTATGAGAATGATCTTTCTGGTTCATTGCCAAAAGAATTAGGTAAGCTTTATAAGCTTGAAAGAATGCTTCTTTGGCAAAATAGTTTTGTTGGTAGAATACCTAATGAGATTGGAAACTGTACTAGCTTGAAGATTCTTGATTTGTCTTTGAATTATTTCTCTGGTGAAATGCCTCAAAGTTTAGGGGAACTTCAAAATCTTGAAGAGCTTATGTTGAGTAATAATAATATCTCTGGTTCAATACCAGCTTCTGTTTCGAATCTTTCGAATTTGATACAGTTGCAGTTAGATACAAATGAGATATCCGGTTTGATTCCTTCTGAGTTTGGAAAGTTGAATAAGTTAACAGTTTTTTTTGCTTGGCAGAACAAGCTTGAAGGCAGTATTCCATCAGAATTGGGAGATTGTAGAAGCCTTGAGGCTTTGGATTTGTCTTATAACTCACTCAATGATACTTTACCTTCAGGTCTTTTTAAGCTTCAGAATTTAACTAAGCTTTTGTTGATTTCTAATGAAATCTCAGGTTTTATTCCTCCTGAGATAGGTAACTGTAGTTCGCTTATTCGACTCCGGCTTGTAAACAACAGAATCGTCGGTGAGATACCGAAGGAAATAGGCTTTCTTAATAACCTTAGTTTCCTTGATCTGTCTCAAAATCGTCTTACCGGATCGGTTCCTCTAGAGATTGGAAAATGTAAAGAACTTCAAATGTTGAATCTAAGTAATAACTCTCTTTCTGGTGTTTTGCCTAGTTATTTGTCTTCTCTTACAATGCTTGAGGTTTTGGATGTCTCAATGAATAACTTTTCTGGTGAAGTTCCAATGAGTATTGGTGAACTTGGTTCACTTCTTAGAGTTATTCTAAGTAAAAACTCTTTCTATGGTTCAATTCCTTCTTCACTTGGAAAATGTTCAGGTATTCAACTTTTAGACCTTAGCAGCAACATGTTCTCAGGGAAAATTCCTTCAGAACTTTTTCAAATTGAAGCACTTGATATTGCTTTGAATTTGAGTCATAATTCATTATCTGGTGTGATTCCACCAGAGATTTCAGCTCTTAACAAGCTTTCTGTTCTAGACCTTTCACATAACATGTTTGAAGGTGATTTGATGGTGTTTGCAAGCCTTGAAAATCTTGTTTCTTTGAACATTTCATACAACAGATTCAGTGGTTATTTACCAGACAACAGGTTGTTTCATCAACTAGCAGCAACCGATTTGGATGGAAATCAAGGTTTGTGTCCTAATGGTCATCATGATAATTCATGTTTCATTGAAAATGCTGCAATGGGAAAAATGCTGAATGGTTCAAATTCTAAGAGGTCAGAGATGATCAAAGTGGCTATTGGATTGCTCAGTTCCTTGACTGTTGCAATGGCAATCTTTGGAGTCATTACGGTGTTTCGAGCGAGGAATATCGTTCGAGATGATAACGATTCTGAGATGGGAGGTGGAGGTTCATGGCCTTGGCAGTTCACACCATTTCAAAAGGTGAACTTTTGTGTGGAGCAAATTTTAAAATGTTTGGTAGAATCCAATGTAATAGGAAAAGGGTGTTCGGGGATAGTTTATCGCGCAGAAATGGAAAATGGCGATGTCATTGCTGTGAAAAGACTATGGCCAACAACAATGGCAGCCACTGCAAGATATGATCATAATCAAAGTGACAAGTTAGCAGTTAATGGAGGAGTTCGCGATTCATTTTCAGCCGAGGTAAAAACTCTCGGTTCTATTCGACACAAGAACATTGTGAGGTTCTTAGGTTGCTGTTGGAACAGAAACACAAGACTTCTTATGTATGATTACATGCCAAATGGGAGTCTTGGAAGTTTACTTCATGAAAGAAGTGGTAATTGCTTGGAGTGGCACATCAGATTCAGGATAATACTAGGAGCAGCTCAAGGTTTGGCTTATTTGCACCATGATTGTGCTCCTCCTATTGTTCATAGAGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCTTACATAGCTGATTTTGGACTTGCAAAGCTTGTTGATGATGGAGATTTTGCAAGATCTTCTAGTACTCTAGCTGGCTCTTATGGTTACATAGCTCCTGAGTATGGCTACATGATGAAGATAACAGAGAAAAGTGATGTATACAGCTATGGTATAGTTGTATTAGAAGTACTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTTCACATAGTTGATTGGGTTAGACACAAAAGAGGTGGGGTTGAAGTGCTAGATGAAACCTTGAAAGCAAGACCAGAATCTGAAATAGAAGAGATGTTGCAAACGTTAGGTGTGGCTTTGCTATGTGTAAACTCAAGGTCAGATGATAGACCAACAATGAAAGATGTGGTGGCAATGATGAAAGAGATTAAACAAGAGAGAGATGAATGTGTGAAAGTTTTTGATGCATCTTCTACAAATGATGAATCAGTGGAAGTGATGAAACATTCATGCACAACAAGTAGCAGCAACACAAATATGCATTTACATTACTCTCCTCATAGTTCTATAACATTAAAGTAA 3321 0.3707 MASHTLYLLLFTLLLPLSFGSNDELNTLFSWINSSTKLPSPLDSNPCKWSFIKCSQQNHVTEINIQSLQLALPFPPNISSLSNLQKLVISGSNLTGTISPDIANCPHLTLIDLSSNSLVGEIPSTIGNLKNLQVLALNSNQLNGKIPIQLCDCVNLKTLDIFDNNLSGTLPNELGKLSNLQVIRAGGNKDIVGKIPYELGECMNLTVLGLADTKISGSLPSSLGKLSMLQTISIYSTLLSGEIPSEIGNCSELVNLFLYENDLSGSLPKELGKLYKLERMLLWQNSFVGRIPNEIGNCTSLKILDLSLNYFSGEMPQSLGELQNLEELMLSNNNISGSIPASVSNLSNLIQLQLDTNEISGLIPSEFGKLNKLTVFFAWQNKLEGSIPSELGDCRSLEALDLSYNSLNDTLPSGLFKLQNLTKLLLISNEISGFIPPEIGNCSSLIRLRLVNNRIVGEIPKEIGFLNNLSFLDLSQNRLTGSVPLEIGKCKELQMLNLSNNSLSGVLPSYLSSLTMLEVLDVSMNNFSGEVPMSIGELGSLLRVILSKNSFYGSIPSSLGKCSGIQLLDLSSNMFSGKIPSELFQIEALDIALNLSHNSLSGVIPPEISALNKLSVLDLSHNMFEGDLMVFASLENLVSLNISYNRFSGYLPDNRLFHQLAATDLDGNQGLCPNGHHDNSCFIENAAMGKMLNGSNSKRSEMIKVAIGLLSSLTVAMAIFGVITVFRARNIVRDDNDSEMGGGGSWPWQFTPFQKVNFCVEQILKCLVESNVIGKGCSGIVYRAEMENGDVIAVKRLWPTTMAATARYDHNQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMPNGSLGSLLHERSGNCLEWHIRFRIILGAAQGLAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRHKRGGVEVLDETLKARPESEIEEMLQTLGVALLCVNSRSDDRPTMKDVVAMMKEIKQERDECVKVFDASSTNDESVEVMKHSCTTSSSNTNMHLHYSPHSSITLK 1106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01087 1106 SUPERFAMILY RNI-like 339 668 - -
Car03g01087 1106 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 5 1074 - -
Car03g01087 1106 SMART LRR_typ_2 634 659 IPR003591 -
Car03g01087 1106 SMART LRR_typ_2 129 153 IPR003591 -
Car03g01087 1106 SMART LRR_typ_2 466 490 IPR003591 -
Car03g01087 1106 SMART LRR_typ_2 346 369 IPR003591 -
Car03g01087 1106 SMART LRR_typ_2 322 345 IPR003591 -
Car03g01087 1106 SMART LRR_typ_2 538 562 IPR003591 -
Car03g01087 1106 SMART LRR_typ_2 394 418 IPR003591 -
Car03g01087 1106 ProSiteProfiles Protein kinase domain profile. 767 1056 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01087 1106 Gene3D Ribonuclease Inhibitor 12 168 IPR032675 -
Car03g01087 1106 SMART serkin_6 767 1057 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01087 1106 Gene3D Ribonuclease Inhibitor 418 681 IPR032675 -
Car03g01087 1106 Gene3D Ribonuclease Inhibitor 169 408 IPR032675 -
Car03g01087 1106 SUPERFAMILY RNI-like 87 433 - -
Car03g01087 1106 ProSitePatterns Protein kinases ATP-binding region signature. 773 795 IPR017441 GO:0005524
Car03g01087 1106 ProSiteProfiles Leucine-rich repeat profile. 324 346 IPR001611 GO:0005515
Car03g01087 1106 Gene3D Phosphorylase Kinase; domain 1 753 860 - -
Car03g01087 1106 SMART LRR_sd22_2 153 182 - -
Car03g01087 1106 SMART LRR_sd22_2 322 348 - -
Car03g01087 1106 SMART LRR_sd22_2 611 639 - -
Car03g01087 1106 SMART LRR_sd22_2 370 402 - -
Car03g01087 1106 SMART LRR_sd22_2 466 487 - -
Car03g01087 1106 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 5 1074 - -
Car03g01087 1106 Pfam Leucine rich repeat 106 166 IPR001611 GO:0005515
Car03g01087 1106 Pfam Leucine rich repeat 324 381 IPR001611 GO:0005515
Car03g01087 1106 SUPERFAMILY Protein kinase-like (PK-like) 746 1053 IPR011009 -
Car03g01087 1106 Pfam Protein kinase domain 769 1051 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car03g01087 1106 PRINTS Leucine-rich repeat signature 397 410 - -
Car03g01087 1106 PRINTS Leucine-rich repeat signature 466 479 - -
Car03g01087 1106 Gene3D Transferase(Phosphotransferase) domain 1 861 1078 - -
Car03g01087 1106 ProSitePatterns Serine/Threonine protein kinases active-site signature. 905 917 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01087 Car-Chr3 52417214 52421128 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01087 43 1058 Receptor kinase-like Gene Family AT5G56040 47.287 0.0 944
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Car03g01087 Pkinase 7.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01087 - - gmx:100815339 1717.21