Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01082 ATGGAGTTACGGTTTCCAACACAGTTCGTTTTCACCTTTCTTGTTATGACGTTGCTTTTGGCTTCTACCAATGCAATCGATCACAATGAATCAAGTGTTGTGGATGGAGAAGAGAAATTGAAGATGCAGAGCTTGAAGAATTCGTCGATGGCGGAAAGGTTAAGTGATTCTTTCAATGAGCATGCAGTTGATAATCCAGAAGAGATTGCTTCTATGGTCGATACGACAATACGCAATTACACGGAGAGAAGGAATCTGAATTTTTTCTCATGTGGGACTGGAAATCCAATTGATGACTGCTGGCGATGTGACAAGCGTTGGTACCTCCGGCGAAAGCGGTTATCCGATTGTGCCATTGGTTTTGGTCGCAATGCTATTGGTGGCCGCGACGGAAGATTCTACGTTGTGTCGAACCCGGGAGATGACAACCCTGTGAACCCAAAACCAGGAACTCTCCGTCACGCAGTAATTCAAGACAGGCCATTATGGATCGTGTTCAAGAGAGACATGGTGATCACTCTGAAGCAAGAACTCATCATGAACAGCTTCAAGACTATTGATGGTCGTGGCGCCAATGTTCATATTGCCTTTGGAGCCTGCATTACTATTCAGTTTATCACCAATGTCATCATCCATGGTGTCCATATCCATGATTGCAAGCCAACTGGGAATGCTATGGTTCGTAGCTCCCCTTCCCATTTTGGATGGAGGACAATTGCTGATGGTGATGGCATTTCCATCTTTGGTTCAAGTCATATTTGGATTGATCACAACTCTCTTTCTAATTGCGCTGATGGACTTGTTGATGCTATTATGGGCTCCACTGCCATTACCATTTCTAATAACTATTTCACCCACCACAATGAGGTTATGCTACTAGGTCACAGTGACTCGTATGTTCGGGACAAGCAGATGCAAGTGACCATTGCATACAACCATTTTGGTGAGGGTCTTATCCAAAGGATGCCAAGGTGCAGACATGGGTATTTCCACGTGGTAAACAATGACTATACCCACTGGGTGATGTATGCCATTGGAGGCAGCGCTGAACCCACAATTAACAGCCAAGGCAACAGATACCTTGCCCCTCTGAACCCTTTTGCTAAGGAGGTGACAAAGAGGGTGGATACAGGGGAAGGCATATGGAAAGGTTGGAATTGGAGGTCTGAGGGAGACCTTTTGCTAAATGGAGCCTTTTTCACTCCATCAGGAGCAGGAGCTGCAGCAAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTTAGTTGGTACCTTAACTTCAAGTGCTGGTGTTCTTAACTGTCGCAGGGGTGGCATATGTTAA 1332 0.4557 MELRFPTQFVFTFLVMTLLLASTNAIDHNESSVVDGEEKLKMQSLKNSSMAERLSDSFNEHAVDNPEEIASMVDTTIRNYTERRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLSDCAIGFGRNAIGGRDGRFYVVSNPGDDNPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAFGACITIQFITNVIIHGVHIHDCKPTGNAMVRSSPSHFGWRTIADGDGISIFGSSHIWIDHNSLSNCADGLVDAIMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNRYLAPLNPFAKEVTKRVDTGEGIWKGWNWRSEGDLLLNGAFFTPSGAGAAASYARASSLGAKSSSLVGTLTSSAGVLNCRRGGIC 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01082 443 PANTHER PECTATE LYASE 18-RELATED 14 440 IPR045032 GO:0030570
Car03g01082 443 PANTHER PECTATE LYASE 14 440 - -
Car03g01082 443 SMART amb_all 169 366 IPR002022 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 117 134 IPR018082 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 141 166 IPR018082 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 177 193 IPR018082 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 241 262 IPR018082 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 343 362 IPR018082 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 385 409 IPR018082 -
Car03g01082 443 PRINTS Pollen allergen Amb family signature 414 437 IPR018082 -
Car03g01082 443 Pfam Pectate lyase 177 358 IPR002022 -
Car03g01082 443 Gene3D - 94 436 IPR012334 -
Car03g01082 443 SUPERFAMILY Pectin lyase-like 72 438 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01082 Car-Chr3 52351964 52358552 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01082 41 443 Polysaccharide Lyase AT4G13710 77.616 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01082 K01728 - gmx:100809277 792.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01082 03 52351964 52358552 Car03g01082 03 52351964 52358552 ECH