Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01072 ATGGAGAACACCGCATCCAAAAACCGAAACTTTGGAGACAATGAACATGAAGACGTCCCTGATTCCTTTTGTTGTTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCTTGTGGCCACATATGCTGTTTTTGGTGTGTCTATAAATCAATGAATTGTCTGCGCGAGTCTCAATGTCCAATATGTAGGCATCAATATTATCACTTCCCAACAGTTTGCCAAACGCTTCATTTTTTGCTTCTTAAGATCTATTCAGTTGCGTACAATAGAAGGAGCAATCAAACTCTTGAGGAAGAGAAGAAGTCGGGCTTCTATTCCCCTCAATTTGATCCGGATACATGTGAATCACAAGCTAAATTTGGTCATTCATGTAGCCCTTCTTTCTCCTCTATGATAAATCTTGTGCCTAATTCCTGCAATGTGGGAACTTCTGAATGTACGGATCAACTAATGTCTATTGCCCATGAGGGAGAATCTGAAACCAATGTGACTCCAGTTGAAGGAAAAACATTGCCTCAGGATAAACTTAATATACAACAGAAAATATCAGTTGCAGATGTGATGTGTACAATGTGCAAACAACTGCTTTTTCATCCCGTAGTTCTTAATTGTGGTCATGTATACTGTGAAACTTGTGTCTACAAGTTAGTTGATGATGAGATGCTTAGATGTCAAGTTTGTCAAAGTCCACATCCAAGAGAATTTCCGAAAGTGTGTTTGGAGTTTGATCAGTTTTTGGAGGAACAATTTCCTGAAGAATATGCACGGCGAAGGGATACTATTGATTTAAAGGATATCAAAGTCAAACCAGAGATTCCTTGTTCATTGGATAACGATAACAAAGAAGAAAGTAGAGAATGGTGGTCTGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGTGGGATGTTTCCTATCACTGGAGATAGATATAGATGCGTCGACTGCAAGGAGAAAATGGGTTTTGATCTTTGTGGGGATTGCTACGACACTCGCTCCAAACTTCCTGGCCGATTTAATCAACAACACACCTCAGATCACAGTTTCAAGCTTATAAAACCTGATGCTATCCGTAGGATTATCTTGAGTCTGGTCAGTGGAAGGTTAGGGGACAGTTCTATAGACAGCGAGTCTTTCAGAAACATAGAATTCGCAGCCGAAGCCTCTAGGTTGTTTGATGATGGAGAAGATAACCAAAATGACCCTGAAGCTACAAATTGA 1236 0.3989 MENTASKNRNFGDNEHEDVPDSFCCCVCLDLLYKPIVLSCGHICCFWCVYKSMNCLRESQCPICRHQYYHFPTVCQTLHFLLLKIYSVAYNRRSNQTLEEEKKSGFYSPQFDPDTCESQAKFGHSCSPSFSSMINLVPNSCNVGTSECTDQLMSIAHEGESETNVTPVEGKTLPQDKLNIQQKISVADVMCTMCKQLLFHPVVLNCGHVYCETCVYKLVDDEMLRCQVCQSPHPREFPKVCLEFDQFLEEQFPEEYARRRDTIDLKDIKVKPEIPCSLDNDNKEESREWWSDPDSKVHIGVGCDFCGMFPITGDRYRCVDCKEKMGFDLCGDCYDTRSKLPGRFNQQHTSDHSFKLIKPDAIRRIILSLVSGRLGDSSIDSESFRNIEFAAEASRLFDDGEDNQNDPEATN 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01072 411 PANTHER UNCHARACTERIZED 8 406 - -
Car03g01072 411 SMART ring_2 191 229 IPR001841 -
Car03g01072 411 SMART ring_2 25 64 IPR001841 -
Car03g01072 411 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Car03g01072 411 Gene3D - 291 357 IPR043145 -
Car03g01072 411 CDD RING-HC 191 229 - -
Car03g01072 411 Pfam Zinc finger, ZZ type 299 338 IPR000433 GO:0008270
Car03g01072 411 SUPERFAMILY RING/U-box 294 357 - -
Car03g01072 411 CDD RING-HC 25 64 - -
Car03g01072 411 ProSiteProfiles Zinc finger RING-type profile. 191 230 IPR001841 -
Car03g01072 411 SUPERFAMILY RING/U-box 14 71 - -
Car03g01072 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 178 273 IPR013083 -
Car03g01072 411 ProSiteProfiles Zinc finger ZZ-type profile. 298 362 IPR000433 GO:0008270
Car03g01072 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 8 406 - -
Car03g01072 411 ProSitePatterns Zinc finger RING-type signature. 206 215 IPR017907 -
Car03g01072 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 110 IPR013083 -
Car03g01072 411 Pfam RING-type zinc-finger 191 219 IPR027370 -
Car03g01072 411 SUPERFAMILY RING/U-box 186 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01072 Car-Chr3 52060378 52064316 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01072 14 65 C3H Transcription Factor Family AT1G74990 41.509 5.00e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01072 - - gmx:100787174 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01072 03 52060378 52064316 Car03g01072 03 52060378 52064316 ECH