Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01070 ATGAAGCCAACTTTGGGTCAGGCTCAAAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTCATGATTATTTTCTGAAAAGAAAGTTACACGGCGCCGCGAAAACTTTTATGACAGAAGGAAAAGTTTCCACTGATCCAGTAGCAATTGATGCACCTGGAGGATTTCTTTTTGAGTGGTGGTCTGTATTTTGGGATATATTCATATCGAGGACAAATGAGAAACATTCGGAGTCTGCCGCAGCTTACATTGAGCAAACAAAGGCCAGAGAACAACTTCAAATGCAGCACTTACAACTAATGCAGCAGCGCAATGCACAGTTACAGCGAAGAGATTCTAATCATCCCACGCTGGGTGGTTCCTTAAACGCTATGAACTCTGAAGGTATGTTGGGGCAGCCACCAGCAAGTGTGTTGGCCATGAAAATGTATGAAGAGCGAATGAAACACCCTCATTCAATGGATTCGGATGCATCTCCAACTCTTATTGATGCAAATAGGATGGCTCTTCTCAAATCCGCAACAAGCCATCAAGGTCAATTAGTTCATGGTAACTCGGGGAATATGCCCAATGCACTGCAGCAAATTCAGGCACGGTCTTCTTTAACCACTGACATCAAAGGAGAAGTTAACATTGGCGCCAGTCCAAAGAGTTTGCCTATGGATACATCAGTTTATCGACAAGCAATTTTACAATCAAAATCTGGGTTAGGTGGTGCAGGATTAAACCAAGGAGTTACAAGTCTTCCATTGAAGGGATGGCCTCTAACCGGAATTGATCAACTTAGACCTGGTTTGGGTGTACAAGTTCAGAAGCCTAATTCAACAGCCCAAAACCAATTTCTTTTGGCATCACAACAACAACAGGTCTTGGCACAGGCTCAGGCACAAAACAACCTTGGAAATTCTAATTATGGTGATATGGATCCACGTAGACTTTCTGGTCTTCCCCGAGGTAGCTTAAATGCAAAGGATGGTCAGTCTAACAGGAATGATGGATCTATTTGCTCCCAAGGTTCACCTAAGATGAAGATGACCCAGTCACAACATTCACTATCTcagcagcaggagcaattgcagcagcagcaaatgcagcagAGTAACAGAAAACGAAAGCAACCTTCTTCTTCTGGAGCTGCCAATAGCACTGGTACTGGAAACACAGCTGGTCCTACACCTAATTCACCGCCATCAACACACACACCTGGTGATGGATTAAATACTGCAAGCAGCATGCAGCATGTTAACAGTGTGCAAAAGAGCATGATGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCTTCAAATTTACTGGATGACATGGAACGATTTGGAGATGTTGGCGCTTTAGATGATAATGTCGAATCGTTTCTATCAAATGATGGAGATGGTGGCAATCTCTATGGAGCAATCAAACAAAGTCCGGCTGAGCAACAAAAAGAGTCTTCAAAAGGTTTCACCTTTGCTGAATTTAGTTTCATTAGAACAAGGAACGCAGTTACTTGCTGTCACTTCTCTTCAGATGGAAAGTTGCTTGCCAGTGCAGGGGACGACAAGCAGGTTATTCTGTGGAACATGGACACTTTAGTCAAAGAGTACACTCCTGAAGAACACAAATTAGTTATTTCAGATGTTCGTTTTAGACCAAATTCATCTCAGTTGGCGACAGCCTCATGTGACAAATCTGTGCGGTTATGGGACGCAGCCAATCCAACTTATTGTGTTCAAGAGTATAGTGGGCACAGTTCAGCTATTATGTCCCTTGATTTCCACCCTAAGAAGACTGATATTTTCTGCTTCTGCGATAGTGAAAATGAGATTCGGTATTGGAACATTACTTCATCCTCTTGTACCCGTGTATCTAAGGGAGGAAGTTCAAAAGTGAGGTTTCAGCCTAGAATGGGACAGTTACTCGCAGCAGCTTCTGATAAAGTAGTTTCTATTTTCGATGTCGAAACTGACAGACAAATTTACTCACTCCAGGGTCATCCTGAACCGGTGAACTATATTTGCTGGGATACTACTGGAGATATGTTGGCATCTGTTAGTCCAAATTCGGTGAAGATCTGGAATTTGACCTCCGGAGAATGCGTTCAGGAGCTCAACTCAACTGGGAACCAGTTCTATTCCAGTGTTTTTCATCCAAGCTATTCAACTTTGTTAGTAGTTGGAGGGTTTTCGTCCATAGAGCTGTGGAACATGGCTGAGAACAAAAGCATGACAATTCCTGCACACGAGAATGTGATTTCTGCTTTGGCTCAGTCACCTGTCACTGGAATGGTTGCATCTGCCAGTCGTGACAACTCTGTAAAGTTGTGGAAATAA 2334 0.4216 MKPTLGQAQSNWEADKMLDVYIHDYFLKRKLHGAAKTFMTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFISRTNEKHSESAAAYIEQTKAREQLQMQHLQLMQQRNAQLQRRDSNHPTLGGSLNAMNSEGMLGQPPASVLAMKMYEERMKHPHSMDSDASPTLIDANRMALLKSATSHQGQLVHGNSGNMPNALQQIQARSSLTTDIKGEVNIGASPKSLPMDTSVYRQAILQSKSGLGGAGLNQGVTSLPLKGWPLTGIDQLRPGLGVQVQKPNSTAQNQFLLASQQQQVLAQAQAQNNLGNSNYGDMDPRRLSGLPRGSLNAKDGQSNRNDGSICSQGSPKMKMTQSQHSLSQQQEQLQQQQMQQSNRKRKQPSSSGAANSTGTGNTAGPTPNSPPSTHTPGDGLNTASSMQHVNSVQKSMMMYGTEATGGLASSSNLLDDMERFGDVGALDDNVESFLSNDGDGGNLYGAIKQSPAEQQKESSKGFTFAEFSFIRTRNAVTCCHFSSDGKLLASAGDDKQVILWNMDTLVKEYTPEEHKLVISDVRFRPNSSQLATASCDKSVRLWDAANPTYCVQEYSGHSSAIMSLDFHPKKTDIFCFCDSENEIRYWNITSSSCTRVSKGGSSKVRFQPRMGQLLAAASDKVVSIFDVETDRQIYSLQGHPEPVNYICWDTTGDMLASVSPNSVKIWNLTSGECVQELNSTGNQFYSSVFHPSYSTLLVVGGFSSIELWNMAENKSMTIPAHENVISALAQSPVTGMVASASRDNSVKLWK 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01070 777 CDD WD40 500 777 - -
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 745 777 - -
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 496 531 - -
Car03g01070 777 SUPERFAMILY WD40 repeat-like 496 777 IPR036322 GO:0005515
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 538 570 - -
Car03g01070 777 Coils Coil 346 366 - -
Car03g01070 777 SMART WD40_4 617 653 IPR001680 GO:0005515
Car03g01070 777 SMART WD40_4 738 777 IPR001680 GO:0005515
Car03g01070 777 SMART WD40_4 574 614 IPR001680 GO:0005515
Car03g01070 777 SMART WD40_4 493 528 IPR001680 GO:0005515
Car03g01070 777 SMART WD40_4 697 736 IPR001680 GO:0005515
Car03g01070 777 SMART WD40_4 529 570 IPR001680 GO:0005515
Car03g01070 777 SMART WD40_4 656 694 IPR001680 GO:0005515
Car03g01070 777 MobiDBLite consensus disorder prediction 322 411 - -
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 581 623 IPR001680 GO:0005515
Car03g01070 777 Pfam WD domain, G-beta repeat 659 694 IPR001680 GO:0005515
Car03g01070 777 Pfam WD domain, G-beta repeat 577 614 IPR001680 GO:0005515
Car03g01070 777 Pfam WD domain, G-beta repeat 538 570 IPR001680 GO:0005515
Car03g01070 777 Pfam WD domain, G-beta repeat 742 777 IPR001680 GO:0005515
Car03g01070 777 Pfam WD domain, G-beta repeat 501 528 IPR001680 GO:0005515
Car03g01070 777 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Car03g01070 777 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 777 - -
Car03g01070 777 Pfam LisH 16 42 IPR006594 GO:0005515
Car03g01070 777 MobiDBLite consensus disorder prediction 302 411 - -
Car03g01070 777 PRINTS G protein beta WD-40 repeat signature 515 529 IPR020472 -
Car03g01070 777 PRINTS G protein beta WD-40 repeat signature 557 571 IPR020472 -
Car03g01070 777 PRINTS G protein beta WD-40 repeat signature 764 777 IPR020472 -
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 538 570 IPR001680 GO:0005515
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 663 703 IPR001680 GO:0005515
Car03g01070 777 ProSitePatterns Trp-Asp (WD) repeats signature. 515 529 IPR019775 -
Car03g01070 777 Gene3D - 473 628 IPR015943 GO:0005515
Car03g01070 777 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 777 IPR044716 GO:0003714
Car03g01070 777 Gene3D - 629 777 IPR015943 GO:0005515
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 496 537 IPR001680 GO:0005515
Car03g01070 777 ProSiteProfiles Trp-Asp (WD) repeats profile. 745 777 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01070 Car-Chr3 52023021 52032610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01070 576 776 Miscellaneous Gene Families AT5G08390 22.816 1.92e-11 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Car03g01070 WD40 0.016 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01070 - - gmx:100786946 1174.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g01070 03 52023021 52032610 Car03g01070 03 52023021 52032610 ECH