Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g01021 ATGTCAGCTTCGGAGAGCCGTCGAGAGAAGTTTGCCGGCTTAACTCTTGATGACGTCTTAGCCAACCCAAAGAGAGTAGCAACTACGccaccaagccaaccaccaccaccacccccaAAGAGTAGAACTCTTTTGGACATCATCAGAGAAGACGAGACCAACAAAAAGGACCGTAGATCTTGGAAAGCCTTCAAGGACAAGCTTCGACTCAAGCGCGCTGGTTCTGCTTGGACATCGTCAATCCACATTCCAACTTCGGATATCCCTATCCAAAATCCAAACAGCAGAAGTTATTCTCAGTTCGGACGTCGGAACTCGGTCCGGTTCCAGAATCAACACGAAGCAGACATGTCAGCTCAATCCATGACTCACCAAGTAGAAGACCTCGACCCAACGGACAACTCCGATGCTTCGGCAACCAAGTCCCAGTTCACTCGCCGCAGCTCCACCCGTTTCTCCAACGACTCCCCAGACAACTCCTCTGGAGGAGGAAATCTCCGACCACAGCTATCACGACGAAATTCCACCACTGTGCCATCAGAGCCGTTTCAGCGAGGACGCGTGGTGACTTTTCGGGACAGCTTCGACGAGGACGAGCCTGAAGAAGACAACAGCAATCTAGACACGGGGAGGGCACTTTCGGCGAGGGAGgcagtggcagcacaggaggcagcagaagctgcagctgctgcagAGGAGGATGCTGTAGGAGGGCCTCCAATGATGATGTCACTTATGGACTTGCTGGAGGAAACTGATAGGGAAATGGGATTGGAAGGGTCGAGGTATATATtgagtgatgatgaagactttgatgaggatgacgaagaatgtgaagacgatgaggaAGGACAAGTTGATTTGGAACACACTTGCTGTGTTTGCATGGTGAAACACAAGGGTGCTTCTATCGCACCTTGTGGGCACAGTTTCTGCAGGATGTGTTCAAGAGAGCTTATGGTGGCTAAGGGAAATTGTCCACTCTGCAACAATTTCATTTTAGAGATTCTTGAAATTTTCTGA 1023 0.435 MSASESRREKFAGLTLDDVLANPKRVATTPPSQPPPPPPKSRTLLDIIREDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIHIPTSDIPIQNPNSRSYSQFGRRNSVRFQNQHEADMSAQSMTHQVEDLDPTDNSDASATKSQFTRRSSTRFSNDSPDNSSGGGNLRPQLSRRNSTTVPSEPFQRGRVVTFRDSFDEDEPEEDNSNLDTGRALSAREAVAAQEAAEAAAAAEEDAVGGPPMMMSLMDLLEETDREMGLEGSRYILSDDEDFDEDDEECEDDEEGQVDLEHTCCVCMVKHKGASIAPCGHSFCRMCSRELMVAKGNCPLCNNFILEILEIF 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g01021 340 MobiDBLite consensus disorder prediction 115 209 - -
Car03g01021 340 SMART ring_2 292 329 IPR001841 -
Car03g01021 340 MobiDBLite consensus disorder prediction 72 100 - -
Car03g01021 340 MobiDBLite consensus disorder prediction 78 100 - -
Car03g01021 340 CDD RING-HC 292 329 - -
Car03g01021 340 MobiDBLite consensus disorder prediction 28 42 - -
Car03g01021 340 SUPERFAMILY RING/U-box 291 336 - -
Car03g01021 340 MobiDBLite consensus disorder prediction 44 58 - -
Car03g01021 340 MobiDBLite consensus disorder prediction 115 183 - -
Car03g01021 340 PANTHER OS01G0917900 PROTEIN 5 340 - -
Car03g01021 340 Pfam Zinc finger, C3HC4 type (RING finger) 289 333 - -
Car03g01021 340 MobiDBLite consensus disorder prediction 1 58 - -
Car03g01021 340 PANTHER OS01G0917900 PROTEIN 5 340 - -
Car03g01021 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 266 340 IPR013083 -
Car03g01021 340 ProSiteProfiles Zinc finger RING-type profile. 292 330 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g01021 Car-Chr3 50885588 50888534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g01021 1 340 C3H Transcription Factor Family AT3G07120 38.235 2.54e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g01021 - - gmx:100795449 385.185