Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00962 ATGGAAAACCAATTCTTTTCTAATAATGCTAATGTACCCCCACAACTCCATTTTAACCCCCCATCAATCCCTCCTAATTGGCAATCAATCTCCCCAACATCTTCCATGGATGTTCAAGTTTCAATTTTGAATTGTGTTTCATCACAACAACACAACCAAGATTGCTTTTACACACAAACACCAACATGGGAAAATTCAACAACAGATCATCATGCTGTTCATCAATTTGATTCAGCACTTAGTTCAATGGTATCTTCCCCTGCAGCTTCAAATTCCAACATGTCAAATGACAATTTTGCCATCAGAGAATTAATTGGAAAATTAGGAAACATTGGTGGTAATTGTAATTCTGATAATGAGATCTCAATTTCACCTCATTCAAAAACTTTAATTGCTTCATCTTCTTACATCAATAGCAACAATACTTCATGTTACAACACCCCTTTGAACTCTCCTCCAAAATTGAACCATAGTTTAGGAAAATCAATGGCCATGAATTCAACTGTAGCTGAATTCTCAGCTGATCCTGGTTTTGCAGAAAGGGCTGCAAAGTTTTCTTGTTTTGGTAGTAGGAGTTTTAATGGAAGGAAAAATGGTGAATTGAGTCAAAGTCAAAGATCTACTACACCATTGATAGAAAATGGAAAACTTTCTAGAGTTTCAAGTAGTCCATCATTGAAAGCACTTGGATCTCAAATTGGTATACAAGAGAATATGAATAATAATTCTCCTCAATTGAATGATCAAATGGAACTTAATAATTCTCAAGAGGAATCAACAATTTCTCAACATGTCCCTAATGTTAATTCAAGGAAAAGAAAAGTTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAACCTCTATTAACCCTTCAATTGCTTGTGAAGCTGTTGAAGATTTAAATGCAAAGCGCATAAAACAAAATGAAGGTGAAAATAATGAAAATGGTCAAGTAAAGGCAGAGGAAGAGTCAAAAGGGGGTACAAATAGTAATAATGGAGGTGATGACAAACAGAATAAGAGTAACACAAAACCTCCTGAAGCTCCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGTTAGGAGGGAAAAAATCAGTGAAAGGATGAAGCTTCTTCAAGATCTTGTCCCTGGTTGCAATAAGGTCACTGGAAAAGCACTCATGCTTGATGAAATTATAAACTATGTCCAATCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAATTGGCTTCTGTTAACACCAGGGTGGATTTTAGTATTGAAAGTCTAATCTCAAAAGATATTTTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCATTAGATTCCTCAGCACCATCTTTTTATGGGCAACAACATCAACAAAACCCAGCAATTCACAATAACATTTCTAATGGAACTGTGACCCACAACTCAGTGGACCCATTAGATAATGGTTTATGCCAAAACCTTAGTATGCATTTAGCTTCACTAAATGGGTTTCATGAACCTGGCTCTCAGTATCCAATAACATTCTCTGAGGATGACCTCCACACAATTGTTCAAATGGGATTTGGACAAACTGACAACAATAAAACACCAATACAATTTCAGAATTTGAACGGTAATAAAGCAAAGAGAAAAAATATATTTTAA 1677 0.3554 MENQFFSNNANVPPQLHFNPPSIPPNWQSISPTSSMDVQVSILNCVSSQQHNQDCFYTQTPTWENSTTDHHAVHQFDSALSSMVSSPAASNSNMSNDNFAIRELIGKLGNIGGNCNSDNEISISPHSKTLIASSSYINSNNTSCYNTPLNSPPKLNHSLGKSMAMNSTVAEFSADPGFAERAAKFSCFGSRSFNGRKNGELSQSQRSTTPLIENGKLSRVSSSPSLKALGSQIGIQENMNNNSPQLNDQMELNNSQEESTISQHVPNVNSRKRKVSSKGKAKETSTSINPSIACEAVEDLNAKRIKQNEGENNENGQVKAEEESKGGTNSNNGGDDKQNKSNTKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRVDFSIESLISKDIFQSNNSLAHPIFPLDSSAPSFYGQQHQQNPAIHNNISNGTVTHNSVDPLDNGLCQNLSMHLASLNGFHEPGSQYPITFSEDDLHTIVQMGFGQTDNNKTPIQFQNLNGNKAKRKNIF 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00962 558 MobiDBLite consensus disorder prediction 305 321 - -
Car03g00962 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 411 IPR011598 GO:0046983
Car03g00962 558 MobiDBLite consensus disorder prediction 196 270 - -
Car03g00962 558 PANTHER BHLH TRANSCRIPTION FACTOR 2 552 - -
Car03g00962 558 Gene3D - 358 432 IPR036638 GO:0046983
Car03g00962 558 SMART finulus 367 417 IPR011598 GO:0046983
Car03g00962 558 Pfam Helix-loop-helix DNA-binding domain 365 412 IPR011598 GO:0046983
Car03g00962 558 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 552 IPR024097 GO:0006355
Car03g00962 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 359 430 IPR036638 GO:0046983
Car03g00962 558 CDD bHLH_AtBPE_like 351 436 - -
Car03g00962 558 MobiDBLite consensus disorder prediction 322 339 - -
Car03g00962 558 MobiDBLite consensus disorder prediction 305 351 - -
Car03g00962 558 Coils Coil 408 428 - -
Car03g00962 558 MobiDBLite consensus disorder prediction 196 288 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00962 Car-Chr3 49695610 49699435 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00962 1 521 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.340 7.26e-108 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g00962 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00962 - - mtr:MTR_7g053410 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00962 03 49695610 49699435 Car07g03238 07 59975440 59979161 PCT