Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00957 ATGGCAAAACCAGGAGTATTAGATTCTGATCCAGAAGTGATGTTAAAGAAAACCTTAGAGTTAAAGAAGGAGTTACAAAGGCTTGTGAATTCCATTGTTGATGATGAAGATATAAGCATTGAAGCCATTGATAAAGCAAAAGAGAGTCTTTGTGTTCTTAAGGAGTTGAAAATTAGAAAGAAATCTTCAATGTGTTTGAAGATAAACAAGAATGTTGTTCATTTTCCAGATGAATTTAAATGTCCACTTTCCAATGAATTGATGAGAGATCCTGTCATTGTTGCTTCTGGTCAGACATATGATAGATTTTTTATTCAAAAATGGTTGAATGCTGGAAATAGGACATGCCCTCAAACTCATCAAGTTCTCTCAAACACTTTCCTTACTCCAAATAACCTTATAAGAGAAATGATTGAAAAATGGTCTAAAAATCAAGGAATTGAATTGTGCAATGTTATAAGCTATATAAGTGATGAAGGTGCTAAAGAAAGTGACAAGAATCACTTTTTATGTTTGCTTGAGAAAATGTCATCAACACTTTCTGATAAAAAATCAGCTGCAAAAGAACTTAGATTATTGACAAAGAAGCACCCTTGTTTTAGAGTACTTTTTTGTGATTTTGAAAATGCAATTCCTCAATTGCTTAAGCCAATTTGTGAAGGAAATTCAATTGGTAATAGTAGTAGTAATTCTATTAACCATGATCTTCAAGAAGATGTTATCACAACACTTCTCAATATCTCAATTCATGACAACAACAAGAAGATAGTAGCCGAAACACCAATGGTGATTCCGCTTCTTATGAAGGCGTTGAGATGCGGAACAATCGAAACAAGAGCTAATTCTGCAGCAACCCTTTTCACGCTTTCGGCTCTAGACTCAAACAAAGAACTTATAGGCAAATTGAACGCGTTAAAACCGCTGATCAGCCTGTTAGAAGAAGGACATCCTTTAACCATGAAGGATGTTGCATCAGCAATTTTCACATTATGTATGATGCACGACAACAAGGCAAGAGCCGTGAAAGAAGGTGCGATTAGAGTGATTATGATGAAGATGAAGAACCGAGTACATGTCGATGAATTACTAGCTATACTTGCGCTACTATCGACTCATCAGAAGGCCGTCCTTGAAATGGCAGAGCTCGGAGCTGTTCCTTGTCTGCTAAGCGTCATGCGAGAGAGCTCGTGCGAGCGAAATAAGGAGAATTGTGTAGCAATCCTTCAAACTATTTGTCTTTATGATAGATCTAAGTTGAAGGATATAAAAGAAGAGGAGAATAGCTATAGAACAATATCTGAACTTGCTAAGAATGGAACATCAAGGGCTAAGAGAAAAGCTAGTGGAATTCTTGAGAGATTGAATAGGGTTGTTAATATCACACACACTGCATAA 1395 0.362 MAKPGVLDSDPEVMLKKTLELKKELQRLVNSIVDDEDISIEAIDKAKESLCVLKELKIRKKSSMCLKINKNVVHFPDEFKCPLSNELMRDPVIVASGQTYDRFFIQKWLNAGNRTCPQTHQVLSNTFLTPNNLIREMIEKWSKNQGIELCNVISYISDEGAKESDKNHFLCLLEKMSSTLSDKKSAAKELRLLTKKHPCFRVLFCDFENAIPQLLKPICEGNSIGNSSSNSINHDLQEDVITTLLNISIHDNNKKIVAETPMVIPLLMKALRCGTIETRANSAATLFTLSALDSNKELIGKLNALKPLISLLEEGHPLTMKDVASAIFTLCMMHDNKARAVKEGAIRVIMMKMKNRVHVDELLAILALLSTHQKAVLEMAELGAVPCLLSVMRESSCERNKENCVAILQTICLYDRSKLKDIKEEENSYRTISELAKNGTSRAKRKASGILERLNRVVNITHTA 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00957 464 SUPERFAMILY ARM repeat 177 454 IPR016024 -
Car03g00957 464 CDD RING-Ubox_PUB 79 121 IPR045210 -
Car03g00957 464 ProSiteProfiles U-box domain profile. 74 148 IPR003613 GO:0004842|GO:0016567
Car03g00957 464 SMART Ubox_2 78 141 IPR003613 GO:0004842|GO:0016567
Car03g00957 464 Pfam U-box domain 76 145 IPR003613 GO:0004842|GO:0016567
Car03g00957 464 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 462 - -
Car03g00957 464 SUPERFAMILY RING/U-box 68 152 - -
Car03g00957 464 Gene3D - 149 459 IPR011989 -
Car03g00957 464 PANTHER U BOX DOMAIN-CONTAINING 5 462 - -
Car03g00957 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 148 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00957 Car-Chr3 49529900 49532309 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00957 137 464 U-box Gene Family AT3G07360 57.313 4.21e-121 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00957 - - gmx:100777031 706.827