Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00941 ATGGAAGCAATCAAAAGTTGTGATGAAAATGAGGTTGTGATGATACCAAATGAACCTCCAAGTGATGAAACAAAGGAATATTTTGTACCAAAAAGGGTGAGTTCAAGACTTCAAGATCGACCAAAGATGCCTTATGACATTTACAACAAGTTCGGTAACAACTTTGTTCAAGCTCAATATGCTGATAAAAAGGTTGAAAATGAAACAAATAAAAGAGGAAGTTCACGACTCCAAAAACGAACTAAGATTCTCTATGACATTTACAACAAGAGAGGCATGAATTTTGAAGACCATTTTGTTAAGAAGAGAACCAAGCCCAATCCTTTGATGCAACACAAAGCATTGGCTACTAAAATAGATGAAAGTGACCCGTGGTGTCATTCAGTTGGCTCTAAAGTGAATGGTGGCAACAATGAATCAAGTTCCACAAATAGTGTTTTACTTGTATTTGATGAACTTGACTTTAGGGGCATTTTGAACTTAAGAGAAACGTTTAGACTTGCCAATCTACGTAACCTGGCTAAGGAGGAAGAGCAGAATCAAAACAAGAACCCAAGGAAGAATAATAAGACTATTGCCACACTTTTGGGGGCTAGCAATGAGGTTAAGAATGGCAATGATGATGAAGGTGTTCCTGGACTCACTACATCAAGATATCTAATGAATAAGCTTCAAGAACTTGCTAAAGTTGGGATGGATAAGGTTAATTTTATGAAAGGACAAGTCTCTAGAGCTATTTCTTCTTCTCCAAGTTTGGTATGCACGGATATTAGCATTGGACAAGAACCTATTAGCATAATTGCAACCAATGAATTTGATGATCCTCCGGTTGCACCAACCGGTTTTCAATATATCACTGCAAATCAAATTGCAAGCACCATAAAGGTTCCATCTAGTGGTCCTGGATGCAACTGCATAGGAAGTTGTAGAGACACTATAACTTGTGGATGTGCTAAGCTTAATGGCCAAAAATTTCCATATGCATGTGGTAACGGTGGCAGGCTGATTGAGCCTCGAGACATCGTGTACGAATGTGGACCTATATGTGGCTGCGGACCTAATTGTGGAAATAAAGTTTCTCAAAAGGCTTTAATTTATCGACTTGAGGTTTTTCGTACTCCCAATAAAGGTTGGGGTGTGAGAACATGGGACTTTATTCCCTCAGGTGCACCAGTGGTAGAATATATTGGTGTACTTAGTAGAGATGATGAATTAGATAATGCTATTGGAAATGAATACATTTTTGACATTGATTGTTTGCACACAATCAAAGGGGAAGGTGGAAGAGAGAGACGTTCCAGCAAAAAAAAATCAGCTAGGGAAAGTTTTTCTGAAAATATTGATGAAGAATTGGAAAATGATCCTGAGTTTTGCATAGATGCTAGTTCTTTTGGTAATGTTTCTAGATTTATCAATCATGGATGTGTGCCAAACCTTTTTGTTCAAGGTATTCTTAGCAGCCACCGTGATATTAGACTTGCTCGAGTCGTACTATTTGCAGCACAAGACATACCTCCCTATCAAGAACTCACCTATGACTATGGTTACAAACTTGATAGTGTTGTTGATCCTGATGGAAAAATCAAGCAATTAGAATGTCATTGTGGTGCAAATGAATGTCGTAAGCGCTTGTACTAA 1638 0.381 MEAIKSCDENEVVMIPNEPPSDETKEYFVPKRVSSRLQDRPKMPYDIYNKFGNNFVQAQYADKKVENETNKRGSSRLQKRTKILYDIYNKRGMNFEDHFVKKRTKPNPLMQHKALATKIDESDPWCHSVGSKVNGGNNESSSTNSVLLVFDELDFRGILNLRETFRLANLRNLAKEEEQNQNKNPRKNNKTIATLLGASNEVKNGNDDEGVPGLTTSRYLMNKLQELAKVGMDKVNFMKGQVSRAISSSPSLVCTDISIGQEPISIIATNEFDDPPVAPTGFQYITANQIASTIKVPSSGPGCNCIGSCRDTITCGCAKLNGQKFPYACGNGGRLIEPRDIVYECGPICGCGPNCGNKVSQKALIYRLEVFRTPNKGWGVRTWDFIPSGAPVVEYIGVLSRDDELDNAIGNEYIFDIDCLHTIKGEGGRERRSSKKKSARESFSENIDEELENDPEFCIDASSFGNVSRFINHGCVPNLFVQGILSSHRDIRLARVVLFAAQDIPPYQELTYDYGYKLDSVVDPDGKIKQLECHCGANECRKRLY 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00941 545 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 63 544 - -
Car03g00941 545 ProSiteProfiles SET domain profile. 366 515 IPR001214 GO:0005515
Car03g00941 545 Gene3D SET domain 247 545 IPR046341 -
Car03g00941 545 Pfam SET domain 377 515 IPR001214 GO:0005515
Car03g00941 545 ProSiteProfiles Pre-SET domain profile. 301 363 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car03g00941 545 SUPERFAMILY SET domain 249 522 IPR046341 -
Car03g00941 545 Pfam Pre-SET motif 258 358 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car03g00941 545 ProSiteProfiles Post-SET domain profile. 529 545 IPR003616 -
Car03g00941 545 SMART set_7 366 521 IPR001214 GO:0005515
Car03g00941 545 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH4 63 544 - -
Car03g00941 545 SMART preset_2 254 350 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00941 Car-Chr3 49168354 49175854 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00941 209 545 EF-hand Containing Proteins AT5G13960 56.213 2.06e-129 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car03g00941 SET 3e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00941 - K11420 mtr:MTR_7g052480 581.252