Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00936 ATGACAACAATCAGTCTTCGGAAGGGAAACACATGTCTTCCACCGGAAGTTAACCGCGTCCTCTATGTTCGCAACCTTCCCTTCAACATAACAAGCGAAGAAATGTACGATATATTCGGCAAATACGGCGTGATTCGTCAGATCCGAATGGGAAACACGCGCGGCACAACTTTCGTCGTTTACGAAGACATTTACGACGCTAAAACCGCTGTCGATCATCTCTCTGGTTTCAACATTGCTAATCGTTATCTCATCGTTCTTTATTATCAGCATGCTAAGATGAGTAAGAAGTTTGATCAGAAGAAGAAGGAAGATGAGATTGCTTGTATGCAAGAGAAGTACGGTGTTACTACTAAAGACAAGTAG 366 0.4262 MTTISLRKGNTCLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGVIRQIRMGNTRGTTFVVYEDIYDAKTAVDHLSGFNIANRYLIVLYYQHAKMSKKFDQKKKEDEIACMQEKYGVTTKDK 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00936 121 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 91 IPR000504 GO:0003723
Car03g00936 121 PANTHER SPLICING FACTOR 3B SUBUNIT 6 6 113 - -
Car03g00936 121 SUPERFAMILY RNA-binding domain, RBD 18 94 IPR035979 GO:0003676
Car03g00936 121 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 84 IPR000504 GO:0003723
Car03g00936 121 PANTHER SPLICING FACTOR 3B 6 113 - -
Car03g00936 121 CDD RRM_SF3B14 17 90 IPR034150 -
Car03g00936 121 Gene3D - 15 114 IPR012677 -
Car03g00936 121 SMART rrm1_1 20 87 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00936 Car-Chr3 48983970 48984335 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00936 7 102 Eukaryotic Initiation Factors Gene Family AT1G22760 32.075 1.93e-08 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00936 K12833 - thj:104811201 221.861