Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00909 ATGGCTACTACTCAAGAATCTTTGCTAGACAAGCCAAGAAAATCCCTTCCTAAAACCTTTTGGTTAATCCTCTCTTTAGCTGCTATCATATCTTCATCAGCCCTTATTGCTACTCATCTCAAGAAACCAATCTCTTTCCACCTTACCTCAGCTCCCCATGTGTACTGCGAACATGCTCTTGATGCAAAATCCTGCTTAACTCATGTATCAGAAGTATCTCAAGGACCAATCTTGGTCACCACAAAAGACCACAAATTGCATGTACTCTTATCCTTATTAACCAAGTCCACCACACACATTCAAAAAACTATGGACACAACAAACGCTATTAAAAGCCGAATTAACAGTCCTAGAGAGGAGACAGCATTGCGTGACTGTGAACAACTAATGGAAATTTCCATGGACAGAATTTGGGACTCAATGTTGGCCCTAACGAAAAATACAATTGACTCACAGCAAGATGCACATACATGGCTAAGCAGTGTGCTCACTAACCATGTAACTTGCTTGGATGGATTAGAAGCCATATCTCAGGTACTTATGGAAAGTGACTTTCAAGACTTGATATCCAGAGCTAGAACTTCTCTGGCTGTGTTTCTTGCTGTTTTTCCTCAACAGGGTCATGACCAATTTGTCGATGAAACATTAAATGGCGATTTTCCGTCGTGGATTACAAGCAAGGATAGGAGGCTTTTGGAGTCTTCAGTTGGGGACATAAAGGCAAATGTTGTGGTGGCTAAAGATGGAAGTGGCAAGTTCAAGACAGTGGCTGAGGCTGTTGCAACTGCACCAGACAATGGTAAGACAAGGTATGTTATCTATGTGAAAAAAGGAACATACAAAGAGAATATAGAAATTGGCTCGATAAAGAAGAATGTGATGCTTGTGGGTGATGGTATGGATGCAACAATAATCACAGGCAACTTGAATTTCATTGATGGAACAACCACCTTTAAAAGTGCAACTGTTGCTGCTGTTGGGGATGGTTTTATAGCACAGGACATTGGGTTCCAAAACACAGCAGGTGCAGAAAAGCACCAGGCAGTGGCTCTCCGTGTCGGTGCCGACCAATCTGTCATCAACCGTTGCCGCATTGACGCCTTTCAAGACACTCTCTATGCACACTCCAACCGGCAATTTTACCGTGACTCTGTCATTACAGGTACCATTGACTTCATCTTTGGAAACGCAGCTGTAGTGTTCCAGAAGTGCAAGTTGGTGGCCCGAAAGCCCATGGCCAACCAAAACAACATGTACACGGCCCAAGGTCGAGAAGACCCAGGTCAGAACACAGGAACTTCAATTCAACAATGTGACTTAACACCAACTGCAGACCTTAAACCTGTGGTGGGCTCCATCAAAACTTTCCTCGGCCGCCCATGGAAGAAATACTCCAGGACTGTTGTGATGCAATCCTTTCTGGATAGCCACATTGATCCAACAGGATGGGCTGAATGGGACGCCGCGAGTAAGGACTTTCTACAAACATTGTACTACGGAGAGTACATGAATAATGGAGCAGGTGCTGGTACCAGCAAGAGAGTGAATTGGCCTGGTTATCATGTCATCACAAGTGCAGCAGAGGCTAGCAAGTTTACAGTAGCACAACTAATCCAAGGTAATGTTTGGTTGAAGAACACAGGGGTGGCTTTTATTGAGGGATTGTAA 1668 0.44 MATTQESLLDKPRKSLPKTFWLILSLAAIISSSALIATHLKKPISFHLTSAPHVYCEHALDAKSCLTHVSEVSQGPILVTTKDHKLHVLLSLLTKSTTHIQKTMDTTNAIKSRINSPREETALRDCEQLMEISMDRIWDSMLALTKNTIDSQQDAHTWLSSVLTNHVTCLDGLEAISQVLMESDFQDLISRARTSLAVFLAVFPQQGHDQFVDETLNGDFPSWITSKDRRLLESSVGDIKANVVVAKDGSGKFKTVAEAVATAPDNGKTRYVIYVKKGTYKENIEIGSIKKNVMLVGDGMDATIITGNLNFIDGTTTFKSATVAAVGDGFIAQDIGFQNTAGAEKHQAVALRVGADQSVINRCRIDAFQDTLYAHSNRQFYRDSVITGTIDFIFGNAAVVFQKCKLVARKPMANQNNMYTAQGREDPGQNTGTSIQQCDLTPTADLKPVVGSIKTFLGRPWKKYSRTVVMQSFLDSHIDPTGWAEWDAASKDFLQTLYYGEYMNNGAGAGTSKRVNWPGYHVITSAAEASKFTVAQLIQGNVWLKNTGVAFIEGL 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00909 555 SUPERFAMILY Pectin lyase-like 240 554 IPR011050 -
Car03g00909 555 PANTHER PECTINESTERASE 20 553 - -
Car03g00909 555 ProSitePatterns Pectinesterase signature 1. 267 286 IPR018040 -
Car03g00909 555 Pfam Pectinesterase 242 541 IPR000070 GO:0030599|GO:0042545
Car03g00909 555 ProSitePatterns Pectinesterase signature 2. 386 395 IPR033131 -
Car03g00909 555 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 55 179 IPR035513 -
Car03g00909 555 TIGRFAM PME_inhib: pectinesterase inhibitor domain 88 178 IPR006501 GO:0004857
Car03g00909 555 PANTHER PECTINESTERASE 20 553 - -
Car03g00909 555 SMART PMEI_2 47 198 IPR006501 GO:0004857
Car03g00909 555 Gene3D - 236 555 IPR012334 -
Car03g00909 555 Pfam Plant invertase/pectin methylesterase inhibitor 56 179 IPR006501 GO:0004857
Car03g00909 555 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 203 IPR035513 -
Car03g00909 555 CDD PMEI-like_4 64 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00909 Car-Chr3 48277080 48279669 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00909 1 555 Carbohydrate Esterase AT1G11580 55.282 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00909 K01051 - gmx:100815836 863.218