Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00908 ATGATAGATTCTGACAACACAACAGGAGAAACATTAAACAACATTTCTGGGGAAGTGGAATTTGACCACATAGACTTTGCATACCCAACAAGACCAGAAACCATTATCCTTAAAAATTTATGTCTCAAAATTCCAGCAGGTAAAACAGTTGCATTAGTTGGTGAAAGTGGTTCAGGGAAATCAACGTTGATATCGCTATTACAGCGATTTTATGATCCAATTGGGGGAGAGATACGTGTTGATGGAGTGAGTATTCATAAATTAAAGATTAAATGGTTAAGGTCGATTATGGGGTTGGTTAGTCAAGAGCCTGCTCTTTTTGCAACAAGTATTAAAGAGAATATAGTTTTTGGTAAGGAAGATGCTAATGATAATGAGATTCTTGAGGCTGCTAAGATTTCTAATGCTCATGATTTCATTAAGTTGCTTCCTCATGGTTATCACACCCAGGTCGGAGAAAGAGGTGTTCAATTATCAGGCGGACAAAAACAGAGAATAGCAATTGCGCGGGCAATAATCAAGAAGCCACGAATCCTTCTTTTAGATGAAGCAACAAGCGCGTTAGACACTGAATCAGAACGACATGTTCAACAAGCACTCGACAATGCAACAACCGGTTGCACCGCCATCATCATCGCCCACCGTCTCTCCACAATCCAAAACGCCGACGACATCGCCGTCATGCGCGACGGTAAAGTAACCGAAATCGGGTCACACGAGCAACTTCTCCAAAATAGTAACGGCTTTTATTCTTCCCTCGTCCGCCTTCAACAACTGAATGAATCCAAAACAGAATCAGAGGAAACCGTTACAACAACTTTCACGCGCTCGGTGGACCCTACCAATTCAGTTGAAAATGAAAACGTGGATATAAAGATGGAAATTGAAATGCGTAATACGGCGTCGTTTTGGAGATTACTTTTATTAAATGGTCCTGAATGGAAACAAGCGGTTATGGGGTGTTTGAATGCAATGGTATTTGGTGCGGTTCAACCTGTTTATGCATTTGCAATGGGATCAAATATATTTGTGTATTTTAATTCGGATTATGAGGAGATCAAAAACAAGACTAGGGTTTATTCACTTTGCTTTTTGGGACTTTCTTTGATCTCTTTGGTGGTTAATGTTGGACAGCACTATAACTTTGGTTACATGGGAGAGTACTTGACTAAACGTGTGAGGGAAAGCATGCTTTCTAAGATACTTACTTTTGAAATTGGATGGTTCGATAGAGATCAAAACTCTACTGGTGCTCTTTGTTCTCGTCTTGCCAATGATGCTAATGTGGTGAGGTCATTAGTTGGTGATAGAATGGCTTTGTTGGTACAAACTTTCTCAGCAGTTGTAACAGCATACACTATGGGTCTAGTCATTTCATGGAGACTAACAATTGTTATGATAGCTGTTCAACCTATTATAATAGCTTGCTTTTACACAAGACGTGTACTACTAAAGAGTATGTCAAGTAAGTCCATTAAGGCCCAACAACAAAGTAGCAAATTAGCTGCTGAAGCCGTTTCAAATCTTAGAACCATCACTGCTTTTTCTTCTCAAGATAGAATACTCAAAATGCTTGAAACGGCCCAACAAGGCCCAAGTAATGAGAATTTTCGACAATCGTGGTTCGCAGGTTTTGGGCTTGGGTTTTCGCAGTTCCTCACGTCTTGTTCTTGGGCCTTGAATTTTTGGTATGGAGGGAAGCTTATTGCTGATGGGAACATAACAAGAAAATCTTTGTTTGAGAGTTTTATGATTGTGGTGAGCACAGGTCGGGTTATAGGTGATGCTGGAAGCATGACTAAAGACCTTGCTAAAGGTTCTAATGTTATGGACTCGATTTTTGCCATCCTAGACCGATGTACAAAAATCGAGCCTAACGACCCTAATGGGTATAAGCCCGATACTTTAATGGGCCAAATTGAATTTTGTGATGTTCATTTTGCATATCCAGCTAGGCTAAATGTTGTTATCTTTCAAGATTTTTCAATTAAAATTGAAGCAAGGAAATCAACCGCATTAGTGGGACAAAGTGGATCAGGAAAATCAACAATCATAGCGTTAATAGAGAGATTCTACGATCCATTAAAAGGAATCGTGACAATAGATGGAATTAATATAAAATCATATAACCTAAAGTCACTAAGAAAACACATAGCACTTGTGAGCCAAGAGCCAACATTGATAAATGGGACCATAAGAGACAACATTGCATATGGAACAACATGTGACAACATTGATGAAATTGAGATCATAGAGGCAGCAAGAGTAGCCAATGCTCATGATTTCATAGCTAGCTTAAAAGATGGGTATGAGACATGGTGTGGGGACAAAGGGATTCAACTTTCAGGTGGTCAAAAACAGAGGATAGCAATAGCAAGAGCCATGTTGAGGAATCCAAAGATGTTGCTACTAGATGAAGCCACAAGTGCATTAGATAACCAATCAGAGAGGGTAGTGCAAGATGCATTGAATAGAGTAATGGTGGGAAGGACTAGTGTGGTTGTGGCACATAGGATGAGTACCATACGCAATTGTGATGTTATTGTTGTGTTAGATAAAGGGAAAGTGATTGAGATTGGAACACATGAAGCTTTGTTGGCTAAAGGACCTTGTGGAGCTTATTACTCTTTGGTAAGTCTTCAAACTAAAAACGCAACCACAACCAAAGACACTACTAATTAA 2682 0.3952 MIDSDNTTGETLNNISGEVEFDHIDFAYPTRPETIILKNLCLKIPAGKTVALVGESGSGKSTLISLLQRFYDPIGGEIRVDGVSIHKLKIKWLRSIMGLVSQEPALFATSIKENIVFGKEDANDNEILEAAKISNAHDFIKLLPHGYHTQVGERGVQLSGGQKQRIAIARAIIKKPRILLLDEATSALDTESERHVQQALDNATTGCTAIIIAHRLSTIQNADDIAVMRDGKVTEIGSHEQLLQNSNGFYSSLVRLQQLNESKTESEETVTTTFTRSVDPTNSVENENVDIKMEIEMRNTASFWRLLLLNGPEWKQAVMGCLNAMVFGAVQPVYAFAMGSNIFVYFNSDYEEIKNKTRVYSLCFLGLSLISLVVNVGQHYNFGYMGEYLTKRVRESMLSKILTFEIGWFDRDQNSTGALCSRLANDANVVRSLVGDRMALLVQTFSAVVTAYTMGLVISWRLTIVMIAVQPIIIACFYTRRVLLKSMSSKSIKAQQQSSKLAAEAVSNLRTITAFSSQDRILKMLETAQQGPSNENFRQSWFAGFGLGFSQFLTSCSWALNFWYGGKLIADGNITRKSLFESFMIVVSTGRVIGDAGSMTKDLAKGSNVMDSIFAILDRCTKIEPNDPNGYKPDTLMGQIEFCDVHFAYPARLNVVIFQDFSIKIEARKSTALVGQSGSGKSTIIALIERFYDPLKGIVTIDGINIKSYNLKSLRKHIALVSQEPTLINGTIRDNIAYGTTCDNIDEIEIIEAARVANAHDFIASLKDGYETWCGDKGIQLSGGQKQRIAIARAMLRNPKMLLLDEATSALDNQSERVVQDALNRVMVGRTSVVVAHRMSTIRNCDVIVVLDKGKVIEIGTHEALLAKGPCGAYYSLVSLQTKNATTTKDTTN 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00908 893 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 2 885 IPR039421 -
Car03g00908 893 CDD ABC_MTABC3_MDL1_MDL2 19 257 - -
Car03g00908 893 Pfam ABC transporter 659 809 IPR003439 GO:0005524
Car03g00908 893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 640 878 IPR003439 GO:0005524
Car03g00908 893 Gene3D - 17 270 IPR027417 -
Car03g00908 893 ProSitePatterns ABC transporters family signature. 158 172 IPR017871 GO:0005524
Car03g00908 893 Gene3D - 630 892 IPR027417 -
Car03g00908 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 11 257 IPR027417 -
Car03g00908 893 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 2 885 - -
Car03g00908 893 SMART AAA_5 46 240 IPR003593 -
Car03g00908 893 SMART AAA_5 667 861 IPR003593 -
Car03g00908 893 Pfam ABC transporter transmembrane region 320 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car03g00908 893 Gene3D ABC transporter type 1, transmembrane domain 2 607 IPR036640 GO:0005524|GO:0016021
Car03g00908 893 CDD ABC_MTABC3_MDL1_MDL2 640 881 - -
Car03g00908 893 ProSitePatterns ABC transporters family signature. 781 795 IPR017871 GO:0005524
Car03g00908 893 CDD ABC_6TM_Pgp_ABCB1_D2_like 307 623 - -
Car03g00908 893 Pfam ABC transporter 37 186 IPR003439 GO:0005524
Car03g00908 893 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 324 605 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Car03g00908 893 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 19 255 IPR003439 GO:0005524
Car03g00908 893 SUPERFAMILY ABC transporter transmembrane region 305 624 IPR036640 GO:0005524|GO:0016021
Car03g00908 893 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 629 881 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00908 Car-Chr3 48215214 48221829 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00908 2 881 Calmodulin-binding Proteins AT2G36910 45.543 0.0 819
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00908 K05658 - gmx:100809399 1257.66