Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00894 ATGGCTGGTGTTTCAAGCCGAACTCGTAGCAAGAATGTTCCGTTGTTTGGTAGTATTTCACTTGAAAGATCAACGGGTAGAAAGAGTGATTTGGGCTCTGTTTTTGGTTGTAAAAGAAGGGTAAAAGAGGAACCTTTTGTGCTGCCTAAAGATGCTAATGTGATTAACATtgatgatgatgatgataatgatgatgataatgatgGGGGTGTGGAGATTTTTGAGGGGAGTGTTGATGTTAAAAAAGAAGTGAAGAGTGAGGAAAGTAGTGGAAGTGATGAAATTGGTGGTAAAGATGAAAGCTTTGGTGGTGAAAACTGGGGTTGGGTGTATGATAATCCGATTATAGTTGATGAGTTTGGTAACATTTATGATGATGATGTTGGTAATGGGGGTGTGAAGGGTTATGAGGGGGGTGTTGATGTTAAAAAGGAAGAAAAGAGTGAGGAAAGTGAAGGTAGTGATGATGAGATTGGTGATAAAGATGAAAACTATGGTTGGGTGTCTGATAATCCTATTACTGTTGATGAATCTGGTGAGAGTGATGTAGAAATTGAGGATTCCGATTCTGATTCTGATTCTGATGATGATGATGAGACTAGTGATGAAGATTATAGAGGTGATGAGGTGAATGAAGTTTCTGATAGTGATGAAGATAGTTCTTGTAGTTCGTCTTATGTTGATGATAATGCagaagaagaagaagggagggaggagaaaaaaatgaagGTTGAAAAGGGTGGAATTTGCAAGAGGAAATTTGAGGAGGCGAGGATTGAGAAACAAGAATCATCAAAGGTGGAAGTAAAATCTGCAAatgtgagtgatgacgatgatgatgttgatgatgaagaGAGGGAGAAGAAAAAAGTGCAGGTTAAAAAGGGTGAAGTTTGTAAGAGGAAATTTGAAGAGGTAAAGATTGAGAAACAACAAGAATCATTAAGGGTGGAAGTAAAATCTGAAAATGTGAGTGATGGTGATAATGAAGAAGGAAAACAACAATATAGAAGAGGTTTAAGTGTTGGAACTGTTGAGAAGATGATGGATTCATCTAAAAAGACAATGATGGAGAACAAGAGAAGGGATCATAAAGGTGAAATTAACTTCAGTAATTGTGAGAAGATGATGGATTCATCTAAAAAGAAAATGGTGGTGAACAAGAGAAAGGATCATAAAGGTGAAATTAACATCAGTAATGGTGAGAATATGATGAATTCATCTAAACAGAAAAAGATGGAGAACAAGATAAAAGATCATAAAGGTGGAGTTAACTTCAGGAATAGTGAGAAGAAGGAATCGACGGAGAGCAAAAGTATTTATCGAACGGCACAGAGCAGTTTATATACGCGAAAGGAGTTGCAATTAGTTGAAATGCTTGCTGAATGCTATTGGGGAAACAAGAATACCAATGACCGTGATTCAATGGTGTTGGAGAGAAAGGATGACAATGTTAATCGAAGAGATACAAAACCGCTGGCTTCTAAGGAGACACGTCCATTGATATGGAGTCTAAACAAAGTAGAAAAAGTGCCTAAAACCAaggaggaggaagaggaagaggagCTGTGGAATGAAATGAGTATGTTGCTTAGAGAAGAAGAAGCTAAATCCATGATTGGCAATATTGGAACAAATGAAGCTATAGAAAAAATGGACAGTCAATACTCTAGTTGTAAACACGACATTCGTCTTGAAGAAGATATCGGGGAGTATTGCAAATTGTGTGGTTGGGTTGTTACAGAGATGAAATATATCTCACCACCAGTGATTGATAGATATCCTAATGAAGGTTATGAAAAAAGGGCTTCATATGGTGGAGAAAATGTCCCAGTCTTTGATGGATCACAGTTCAATGTTTATGGTGATGACTCAAATACTCATTTCTCTCTCAATAAAGGCACAGTTTGGGACCTAATTCCTGAAGAAAAACAAAGCCTGTATCCACATCAACAAGAAGGATTTGAGTTCATCTGGAAAAACTTAGCCGGAAGCATTGATCTTCGCAAGTTGATGAATGCCGGTCCTCGCAGCGAGGGTGGCTGCATTATTTCGCATGCTCCTGGTACTGGGAAGACACGGTTGACGATTGTTTTCCTCATGGCATACTTGCAGGTGTTCCCGAAATGCAGGCCGGTTATCGTGGCTCCTGCAAGTTTATTGCTTACATGGGAAGATGAGTTCAAAAAATGGGGCAAAGGAATTACATTTCATAATTTGAACAATCCTGAATTATCTGGTAAAGAGCATGATGATGCAGTTGATTTGTATAATCCAGGGAATACTGTGGACGTGATACGGATGGTGAAAATGATATCGTGGTTCAAAGAAAAGAGCATTATTGGAATCAGTTATAACTTGTATGAGATTCTAGCTGGAGGAGGAGAAACCAAAGATAGGAGAAAAAGAAAAAGAGAACATGATGACATGAAAAAGTATCTCGTAGAAGTTCCTGGTTTGTTGGTGTTGGATGAAGGCCATACACCAAGAAATCAAAGGAGTGGTATTTGGAAGGTGTTTTCAGAGATGCAAACGCCGAAGCGAATCATCCTTTCTGGAACGCCTTTCCAGAACAATTTAACTGAACTATACAACACTTTGAGCTTGGCAAAACCTTCTTTTCCGAACATGCTATCACCCCAGCTCAAAAAGTTTTGCCTGAAGCAGGAACACAAAGCAGCATCTAAAGAATTGAGTTGGGAACCTGTTTATAGTAAAACAACAGGAAGTCCTTCTGATGATAAGCTTAAGCAGTTGAAGTTGATAACAGATTCCTTTGTTCATGTTCACAAAGGCTCCATCCTTCAGAAGAAGCTTCCCGGGTTAAGGGATTGTGTCCAGTTTTTGAAGCCAGACAGTTTCCAGAAGCAAATTATTGACAACATTTGTATTCCTCAGAATCCATTTAAATTCGAGCGTAAGATGGCATTGGCATCTATCCATCCGTCTCTTTTCCTCGAATGCAGTCATATTTTAGAAAGCAAAGAATCTTTTATAGACAAGGAACGGCTGGAAAATCTTAGACTCAACCCATATGGAGGTGTCAAAACCAGGTTTTTGGTCGAGTTTGTTAGGCTTTGTGATGCAGTTAACGAGAAAGTTCTTGTGTTCAGCCAATACCTCGACACTCTAAACTTAATTATAGACCAATTAAACTCAGTTTTTAATTGGTCATTGGGAAAAGAAGTGCTGTTCATGTCTGGAAAGGATGATAAAAAGGATAAGCAATACTTAATCCATAGCTTCAATGATCCAAGTTGCCAAGCGAAGATTCTCCTTGCATCGACAAAAGCTTGTTCCGAGGGAATTAGCTTAGTTGGAGCTTCAAGGGTTGTGCTACTTGATGTTGTATGGAATCCATCAGTGGAAAGACAAGCTATCAGCAGAGCATATAGGCTTGGACAGAAGAGAGTTGTATACACATACCATCTCATCACTGAAGGGACTAGTGAATGGGACAAATATTGTAAACAGGCAAAAAAAGATCGGTTATCCGAACAAGTTTTTGCAGCTAGAAATGCTGACAACGATAAGTCCAAGAGCTCGGCTGCGGACTTTGAAGATAAAGTTCTTGATCAGATGACTCGGCACGAAAAGCTTAAAGACATGTTTGGTGAGTGTGTGCTGCAGCCGAAGGAGCGAGATATGGTCGAGAGTTTTGGCCTTTCATTATGA 3675 0.3777 MAGVSSRTRSKNVPLFGSISLERSTGRKSDLGSVFGCKRRVKEEPFVLPKDANVINIDDDDDNDDDNDGGVEIFEGSVDVKKEVKSEESSGSDEIGGKDESFGGENWGWVYDNPIIVDEFGNIYDDDVGNGGVKGYEGGVDVKKEEKSEESEGSDDEIGDKDENYGWVSDNPITVDESGESDVEIEDSDSDSDSDDDDETSDEDYRGDEVNEVSDSDEDSSCSSSYVDDNAEEEEGREEKKMKVEKGGICKRKFEEARIEKQESSKVEVKSANVSDDDDDVDDEEREKKKVQVKKGEVCKRKFEEVKIEKQQESLRVEVKSENVSDGDNEEGKQQYRRGLSVGTVEKMMDSSKKTMMENKRRDHKGEINFSNCEKMMDSSKKKMVVNKRKDHKGEINISNGENMMNSSKQKKMENKIKDHKGGVNFRNSEKKESTESKSIYRTAQSSLYTRKELQLVEMLAECYWGNKNTNDRDSMVLERKDDNVNRRDTKPLASKETRPLIWSLNKVEKVPKTKEEEEEEELWNEMSMLLREEEAKSMIGNIGTNEAIEKMDSQYSSCKHDIRLEEDIGEYCKLCGWVVTEMKYISPPVIDRYPNEGYEKRASYGGENVPVFDGSQFNVYGDDSNTHFSLNKGTVWDLIPEEKQSLYPHQQEGFEFIWKNLAGSIDLRKLMNAGPRSEGGCIISHAPGTGKTRLTIVFLMAYLQVFPKCRPVIVAPASLLLTWEDEFKKWGKGITFHNLNNPELSGKEHDDAVDLYNPGNTVDVIRMVKMISWFKEKSIIGISYNLYEILAGGGETKDRRKRKREHDDMKKYLVEVPGLLVLDEGHTPRNQRSGIWKVFSEMQTPKRIILSGTPFQNNLTELYNTLSLAKPSFPNMLSPQLKKFCLKQEHKAASKELSWEPVYSKTTGSPSDDKLKQLKLITDSFVHVHKGSILQKKLPGLRDCVQFLKPDSFQKQIIDNICIPQNPFKFERKMALASIHPSLFLECSHILESKESFIDKERLENLRLNPYGGVKTRFLVEFVRLCDAVNEKVLVFSQYLDTLNLIIDQLNSVFNWSLGKEVLFMSGKDDKKDKQYLIHSFNDPSCQAKILLASTKACSEGISLVGASRVVLLDVVWNPSVERQAISRAYRLGQKRVVYTYHLITEGTSEWDKYCKQAKKDRLSEQVFAARNADNDKSKSSAADFEDKVLDQMTRHEKLKDMFGECVLQPKERDMVESFGLSL 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00894 1224 MobiDBLite consensus disorder prediction 313 415 - -
Car03g00894 1224 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 1 1221 - -
Car03g00894 1224 MobiDBLite consensus disorder prediction 259 274 - -
Car03g00894 1224 MobiDBLite consensus disorder prediction 75 100 - -
Car03g00894 1224 Gene3D - 626 907 IPR038718 -
Car03g00894 1224 MobiDBLite consensus disorder prediction 177 216 - -
Car03g00894 1224 MobiDBLite consensus disorder prediction 121 246 - -
Car03g00894 1224 Pfam Helicase conserved C-terminal domain 1027 1134 IPR001650 -
Car03g00894 1224 Pfam SNF2-related domain 661 961 IPR000330 GO:0005524|GO:0140658
Car03g00894 1224 SMART ultradead3 643 890 IPR014001 -
Car03g00894 1224 MobiDBLite consensus disorder prediction 351 397 - -
Car03g00894 1224 MobiDBLite consensus disorder prediction 57 72 - -
Car03g00894 1224 MobiDBLite consensus disorder prediction 313 335 - -
Car03g00894 1224 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 673 873 IPR014001 -
Car03g00894 1224 MobiDBLite consensus disorder prediction 53 108 - -
Car03g00894 1224 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 1 1221 IPR044567 GO:0080188
Car03g00894 1224 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1022 1179 IPR001650 -
Car03g00894 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 819 1172 IPR027417 -
Car03g00894 1224 CDD SF2_C_SNF 1016 1145 - -
Car03g00894 1224 SMART helicmild6 1049 1134 IPR001650 -
Car03g00894 1224 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 639 889 IPR027417 -
Car03g00894 1224 MobiDBLite consensus disorder prediction 259 289 - -
Car03g00894 1224 Gene3D - 940 1215 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00894 Car-Chr3 47678543 47683052 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00894 1032 1164 RAD5 or RAD16-like Gene Family AT5G43530 39.850 3.01e-16 82.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car03g00894 SNF2_N 1.5e-18 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00894 K10875 - gmx:100812737 885.56