Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00890 ATGCGTAGACTCTTCCCCATATCATCATCTCCTTTCGAAACGGCAAAGACTCTTAAAGATCGAGGCAAATTCCTAAACGACAGAAAAGAGATTATAGGAAAAGTCCCCGGAGTTGAAGTTGGCGACGTTTTTCAATATTGGAATGAACTAAACATCATTGGCCTCCACCGTGAAATGAAATATGAAAAGTACATCGATCACGTGATCAGGGACCGAAAAAGGATTGCTACTAGCGTCGTTTGCAACGGTTTAGATGATGACGGATTGGAACATTACGAAGTTTATATTTCTACTGAGATAAGAGAAAATGCTGAATTATTAGTTAATAGCTTTAATGTTAAAAATGACATTAGAGTTATAATTAAGTGTTTTTTGAAGAATAGTGGTCGCTGCGGCATGGATGTTTATTGTTATTATGGTCTTTATAAGGAAGAGGTTGCATGGAATGTATTGATGAAATATGGAATTGATGGAATTAGAAAAGGTTTAATTGTTGAAGATATTTCTCGTCAGAGAGAGGCTGTTCCTATATGTGTGATTAATACTGTGGATAAAGAGAGGCTTACAGTTGAATCTTTTGTTTACAAGACTAAAATGATTTATCCTAATTGGTGTAAACCTATTCCAGTTCCTCATCTAGGGTGTGATTGTGAAGGTAAATGTGGAGATTCTGCGAAGTGTTTATGTGCTGTGAGGAATGGTGGGAAAATTCCATATAATAAGAATAATGTTATTGTGGCATCAGGGGGTGTGATTCATGAGTGTGGTCCTTATTGTAAGTGTAGTGCAGATTGTCCTAATAGAGTGAGTCAAAAAGGGATTAAATTTAATCTTGAGATATCCAGGACTGAAAGAAAAGGGTGGGGTGTGAGGTCACGTGCCACAATTCCAGCTGGTAGTTTTATTTGTGAGTATATAGGTGAGGTTATTGAAGATGATGAAGTTGACAAAAGGGTTGATAATGATGAGTATTTGTTTAGTATTGGTGATTATCATATGGATGATAGTGTGTTGAAAGAGGCTTATGCTGTCTTGTGCTGGATGGCAACGAGAATGTTAAGACGAAGAACTGTTATTGTGGTGCCTTGA 1089 0.3701 MRRLFPISSSPFETAKTLKDRGKFLNDRKEIIGKVPGVEVGDVFQYWNELNIIGLHREMKYEKYIDHVIRDRKRIATSVVCNGLDDDGLEHYEVYISTEIRENAELLVNSFNVKNDIRVIIKCFLKNSGRCGMDVYCYYGLYKEEVAWNVLMKYGIDGIRKGLIVEDISRQREAVPICVINTVDKERLTVESFVYKTKMIYPNWCKPIPVPHLGCDCEGKCGDSAKCLCAVRNGGKIPYNKNNVIVASGGVIHECGPYCKCSADCPNRVSQKGIKFNLEISRTERKGWGVRSRATIPAGSFICEYIGEVIEDDEVDKRVDNDEYLFSIGDYHMDDSVLKEAYAVLCWMATRMLRRRTVIVVP 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00890 362 SMART preset_2 165 260 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car03g00890 362 Pfam SET domain 287 329 IPR001214 GO:0005515
Car03g00890 362 Gene3D - 30 158 IPR036987 -
Car03g00890 362 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 12 336 - -
Car03g00890 362 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 12 336 - -
Car03g00890 362 Pfam SAD/SRA domain 32 152 IPR003105 -
Car03g00890 362 SUPERFAMILY SET domain 160 329 IPR046341 -
Car03g00890 362 SMART G9a_1 28 159 IPR003105 -
Car03g00890 362 SUPERFAMILY PUA domain-like 16 155 IPR015947 -
Car03g00890 362 Pfam Pre-SET motif 168 268 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car03g00890 362 Gene3D SET domain 159 353 IPR046341 -
Car03g00890 362 ProSiteProfiles Pre-SET domain profile. 213 273 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Car03g00890 362 ProSiteProfiles SET domain profile. 276 362 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00890 Car-Chr3 47446708 47447859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00890 9 326 Su(var)3-9 homologs AT1G73100 31.063 3.72e-43 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Car03g00890 SAD_SRA 5.4e-11 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00890 K11420 - cam:101497397 754.977