Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00877 ATGGCAAATGATGCTAATGAAAACTTATCTACCAcatcctcctcattatcttcctcatcatcatcaacatcaAATTCAAATTCAAATTCATGCACAAAAAATAGTCCTCAAAATGTCATGAAAAGCaagaaaagagagagaaaacaaaacgacacaaaacaCCCTACTTATAGAGGTGTTAGAATGAGAGCATGGGGGAAATATGTGTCTGAAATTCGTGAGCCAAGAAAGAAATCAAGAATATGGCTTGGGACATACCCTACAGCTGAAATGGCAGCTAGAGCTCATGATGTAGCTGCTTTAGCTATAAAGGGTCATTCAGCTTACCTTAATTTCCCTAATTTGGCTCAAAATCTTCCAAGGCCTTCAACTACATCACCAAAGGACATTCAAGCTGCAGCCGCAAAAGCAGCAGCTACTATCTTTGTGGAAATCAAGGATCAACAAAATCAAGAAGATCAAGATTCATCTTCAACTCTATCATTAGAGAATGTTCGAGAGTCTTCGAATTCTCCGTcttctactactactgttactactgctactactgatgatgacgatgatgatACACTCTTTGATTTGCCGGATCTTTTACTTGATGACAAAAATGGActtttctcttattcttcttcttcttGGCAATTATGCGCCGTTGATAGCGGACTTCGGCTTGAGGAGCAATTATTGTGGGAGTTCTACTAG 702 0.3134 MANDANENLSTTSSSLSSSSSSTSNSNSNSCTKNSPQNVMKSKKRERKQNDTKHPTYRGVRMRAWGKYVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAQNLPRPSTTSPKDIQAAAAKAAATIFVEIKDQQNQEDQDSSSTLSLENVRESSNSPSSTTTVTTATTDDDDDDTLFDLPDLLLDDKNGLFSYSSSSWQLCAVDSGLRLEEQLLWEFY 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00877 233 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Car03g00877 233 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Car03g00877 233 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Car03g00877 233 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Car03g00877 233 MobiDBLite consensus disorder prediction 1 38 - -
Car03g00877 233 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Car03g00877 233 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Car03g00877 233 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 10 233 - -
Car03g00877 233 MobiDBLite consensus disorder prediction 39 58 - -
Car03g00877 233 MobiDBLite consensus disorder prediction 147 186 - -
Car03g00877 233 MobiDBLite consensus disorder prediction 1 58 - -
Car03g00877 233 MobiDBLite consensus disorder prediction 147 181 - -
Car03g00877 233 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Car03g00877 233 Pfam AP2 domain 55 106 IPR001471 GO:0003700|GO:0006355
Car03g00877 233 PANTHER ETHYLENE RESPONSE FACTOR 10 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00877 Car-Chr3 47010273 47011301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00877 44 229 AP2-EREBP Transcription Factor Family AT2G44940 53.398 1.47e-67 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Car03g00877 AP2 4e-13 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00877 03 47010273 47011301 Car03g00877 03 47010273 47011301 ECH