Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00876 ATGGGGAGTATGGGTGAGACTGATAGAAAACGGCGTCACTTTAATTCCTTGTCACATACACCTGCAACTGCCAAGAAGCTACCCTTCTTGCCAATTTCTGAAGACAAAAAGCTTGATATTGCTGTACTTCATTATCAAAATCAAAAGCTTACACAGAAATTAGAGACTCAGAAGTTAGAATATGCATCTCTTGAGAATAAATTTTCTCAACTGAAGGAGAGGCAACAGTCATATGGTTCTACTTTAGCAGTAGTCAAGAAGTCTTGGGAGCAGCTGGTTAATGATTTAGAGTCGTGTTCTGAACGCACAAGAGAGTCTAGGTGCAAAGCAGATTCCAGATTTGCATCAAGTACAGAAGATGGCAGCTCATCTACTGTTCAAGATGTTTTTCTTAGCCGACTTTTGCAAACTGGTGCAACTGACACTTCCTCCACATATCACTATGCAAACGAGATGGAACAGCACAGAGAAATTACTGCTGAAAAAGCTAAAAGCATTTTGAATAATATAGTGACATCTATTAATAACTTTCAGTGTCTGAAAGATGGATTTCGTACTGCATTACTGAAAAAGCTTCAAGGAGATGTTTCATGTGGGCAGAAGTTGTCCAATGATCTGGATTTGGAAAGTAAAAACTTGAGATTGGCATTAAGTGAACTTCACTTAAAGCACAAGTCTTTAGCAAGTGATTTCCGAATTCAGAGGGATCTGGATGCCAAAAATAAAGCCGAGCTTAAACGGTTAAAAGGGGAACTGGAAAGCATGGTTGAAGAGTTAGAAGAAAGCAATCACAAACTTGCAACACTTAAGGTAGAGAAAGATGCAGCCAAAGGGGTAGTTCTCCCAGTATTAACAGTTGGCAATACACACATTCCTAACGATAAGATCAGAGACAAACAAAAGGATTTACAAGATATGGAATCTACTTTGAAGGAGCTATTGGACCAAGCTTCAACACGATTAGTGGAACTGAAAAGTCTTCATGAAGAAAGAATAAGGGTATTACAGCAATTGTGTGATCTACAGAACACATTGAAGAATTTGAAGTGGATTACTTCTTCCCATGCATTCCAATTGGTTAGAGATCAGATAGACAAATCAAAATCGGAAGTGCGGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGTTGAGAAGGATAATCTTGCATGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCTGATCTTTTTCAAAGATCTATGGTAGTTTCTGATCTTAGGGTGGCTGATATACGCACTGAGATGCAGAAAACAATAGAGCAAAGAAATGTGATTGAAAATAAGCTGAAAGAGGAAGCAAAAGAACCAGGAATGAAAGAAATTATTGCTGAATTTAAATCTCTGCTTTCTTCATTTCCTGAGGAAATGGGATCTATGCAAAATCAACTAAGTAAGCATAAAGAATCAGCTTCAGATATCCATTCTCTGCGTGCAGATGTGCAGTCTATTTCCAGTATCCTTGATCGGAAGGTTAAAGAATGTGATGTATTATCCGTTAGGTCTGCCGGTCAACTTGCTGAGATAAACAGTCTGCTTGCTGTGGTTCAAGACTTGCGAGTGACCGAGGATGAGATGAAGTTGATACTGCGAATGTATAGACATGAGACCATTGATTCAAGGGATGTCATGGAAGCAAGGGAAGCAGAATACAGAGCATGGGCACATGTTCAAAGTTTGAAATCATCTCTTGATGAGCACAACTTAGAAGTTCGAGTTAAGATGGCAAATGAAGCCGAAGCCAGATCGCAGCAAAAGCTTGCTGCGGCTGAAGCTGAGATAGCAGACATGAGACAAAAATTAGATGATTCTAAAAGGGAGATGTGTAAACTGTCTGATGTCTTGAGATCGAAAAATGAAGAAAATGAAGCCTACTTATCTGAAATAGAGACTATTGGACAAGCATATGATGACATGCAAACCCAAAATCAACATCTGTTGCATCAGATTACTGAGAGAGATGATTACAATATTAAGCTTGTTTTAGAAGGTGTAAGGGCTAGACAAAAACAGGATTCTTTGCTCATGGAGAACAGATTATTGGACCAAGAGATCCAGCAATCAAACGTATCTCTGAAAATATATGATACAAAAGCTGCAAGAATTGAAGACCAGCTGAGGTTTTGCTCAGATCAGATTCAAAAACTTGCAGACAATAAGTTTCAAAGTTCTGTCTTTTTGGAAAATTCAGAAAAAAAACTGTCGGATATTAGACCATCATCGCAACAGGTTAGGGATACAGCGGTAGAATTGCAATCTAAAATTAGTAGTAGCCGGGTGACTCGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGATTTGCTAAAAAGAGAGTAGAGGAAGATCTCGAAGTTGCTAGGAGAAACTTGTCACATCTTAAAGCACAAAATGAGGGTACCTCAGTAACTGATAAGCTTCAAGAGGAACTGGGAGAGTACAGGAAAATCGTCAAGTGCAGTATTTGCCGAGACAGGACAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCAACCCATGTATCCAGAAAATTGCTGGGAGTCGGCAGCGCAAATGTCCACAATGTGGTGCAAGCTTCGGGGCTAATGATATTAAGCCAGTTTATTTGCCCGAACTGGCCTATGTGCCTTGGAAGTTGACATTCCTAAAAGTGCAATCACATTGTCTTACTCTTACATCAATAGTTCTTTTTCCTGCTGCTATGGCAGAAATTCAAATTTTGGCTTCAGAGGCTTGTGTTGTACTTGTAAATATCGTAGATTCATAA 2796 0.3913 MGSMGETDRKRRHFNSLSHTPATAKKLPFLPISEDKKLDIAVLHYQNQKLTQKLETQKLEYASLENKFSQLKERQQSYGSTLAVVKKSWEQLVNDLESCSERTRESRCKADSRFASSTEDGSSSTVQDVFLSRLLQTGATDTSSTYHYANEMEQHREITAEKAKSILNNIVTSINNFQCLKDGFRTALLKKLQGDVSCGQKLSNDLDLESKNLRLALSELHLKHKSLASDFRIQRDLDAKNKAELKRLKGELESMVEELEESNHKLATLKVEKDAAKGVVLPVLTVGNTHIPNDKIRDKQKDLQDMESTLKELLDQASTRLVELKSLHEERIRVLQQLCDLQNTLKNLKWITSSHAFQLVRDQIDKSKSEVREYQALYEKLQVVEKDNLAWREREWYIKNDLADLFQRSMVVSDLRVADIRTEMQKTIEQRNVIENKLKEEAKEPGMKEIIAEFKSLLSSFPEEMGSMQNQLSKHKESASDIHSLRADVQSISSILDRKVKECDVLSVRSAGQLAEINSLLAVVQDLRVTEDEMKLILRMYRHETIDSRDVMEAREAEYRAWAHVQSLKSSLDEHNLEVRVKMANEAEARSQQKLAAAEAEIADMRQKLDDSKREMCKLSDVLRSKNEENEAYLSEIETIGQAYDDMQTQNQHLLHQITERDDYNIKLVLEGVRARQKQDSLLMENRLLDQEIQQSNVSLKIYDTKAARIEDQLRFCSDQIQKLADNKFQSSVFLENSEKKLSDIRPSSQQVRDTAVELQSKISSSRVTRMELQVELEKERFAKKRVEEDLEVARRNLSHLKAQNEGTSVTDKLQEELGEYRKIVKCSICRDRTKEVVITKCYHLFCNPCIQKIAGSRQRKCPQCGASFGANDIKPVYLPELAYVPWKLTFLKVQSHCLTLTSIVLFPAAMAEIQILASEACVVLVNIVDS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00876 931 Coils Coil 242 272 - -
Car03g00876 931 MobiDBLite consensus disorder prediction 1 20 - -
Car03g00876 931 MobiDBLite consensus disorder prediction 1 15 - -
Car03g00876 931 Pfam Zinc finger, C3HC4 type (RING finger) 827 865 IPR018957 GO:0046872
Car03g00876 931 SMART ring_2 827 865 IPR001841 -
Car03g00876 931 PANTHER RING FINGER PROTEIN-RELATED 1 879 IPR013956 GO:0004842|GO:0010390
Car03g00876 931 Coils Coil 770 804 - -
Car03g00876 931 Coils Coil 417 444 - -
Car03g00876 931 Coils Coil 47 74 - -
Car03g00876 931 SUPERFAMILY RING/U-box 820 879 - -
Car03g00876 931 ProSitePatterns Zinc finger RING-type signature. 842 851 IPR017907 -
Car03g00876 931 ProSiteProfiles Zinc finger RING-type profile. 827 865 IPR001841 -
Car03g00876 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 880 IPR013083 -
Car03g00876 931 Coils Coil 707 727 - -
Car03g00876 931 CDD RING-HC_BRE1_like 825 866 - -
Car03g00876 931 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 879 - -
Car03g00876 931 Coils Coil 364 384 - -
Car03g00876 931 Coils Coil 581 615 - -
Car03g00876 931 Coils Coil 296 316 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00876 Car-Chr3 46908250 46936720 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00876 756 878 C3H Transcription Factor Family AT3G58030 30.709 1.01e-08 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00876 K10696 - gmx:100790337 1345.49
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00876 03 46908250 46936720 Car03g00876 03 46908250 46936720 ECH