Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00872 ATGAACTTAACATACGAACAGAGGCTCCAGGTCGCCGCCAAATTAATACTTGACGACGACACACGCGCCGGCGATGCGCCTCCGAGTGAAGAAGAGCTTGGGATTAAGGCAACACTCAAGCCGCACCAAGTGGAAGGTGTTTCGTGGCTCGTTAGGAGGTATAAACTCGGCGTCAATGTTATGGGATTGGGAAAGACTTTGCAAGCTATCTCATTTTTAAGCTATTTGAAAGTGCGACAGTTGTCACTTGGGCCATTTTTGGTTCTATGTCCTTTAAGTGTGACAGATGGTTGGGTGTCTGAGATAATCAAATATGCCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATGTAGGCGCAGTCTACGTATGAAAACACATGAATATGTGACAAGGCATTCAACACATGATGTCGTTTTGCCTTTTGATTTGCTGTTAACTTCATACGACATTGCGCTGATGGATAAGGATTTCCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCCCAAAGGCTTAAAAACCCATCAAGTGTTTTATTTAATGTTCTCAAAGATCGCTATGTCATGCCAAGACGGTTGTTGTTGACTGGTACACCTATTCAGAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGTATGCCATCTGTCTTTGGGACACTAGATCAGTTCCTTTCTACATTCAGGGACATCAGTGATCTTACCTCAGGTCATGATTCTCCAAAGGTAAAGGAGAGACTTCAAATCCTGAGAAGTGTATTGGCTGCTTTTATGCTTCGACGAACCAAATCAAAGCTTATGGAGTCTGGAAGTTTAGTGCTGCCATCACTCACTGAGACAACAGTGTTAGTACCCCTTGTCAGCCTGCAAAAAAAGGTCTATATGTCAATACTGAGGAAGGAACTTCCGAAGCTAGTTGCACTATCTTCTGGAACATCAAATCACCAATCACTACAGAATACTGTGTTACAACTAAGAAAAGCATGCAGCCATCCTTATCTCTTTCCGGGCATTGAACCAGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAACTATTGATTCTGGACCAACTTCTTCAAAAGCTACATCATTATGGACATCGTGTTCTTCTTTTTGCTCAGATGACTCATACGCTTGACATTTTACAGGATTATTTGGAGTTACGTAAGTATTCTTACGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGCAACCCATCATCTAATATGGGCTTGAATTTTGAAGCTGACCAAAATGGAGCTTTTGTTTTTATGATCTCAACAAGAGCTGGGGGAGTTGGCTTGAATCTTGTGGCTGCTGATACCGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAACAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAATCATGTTTTGTGTATAAACCTTGTTACTGAACATACAGTGGAGGAAGTGATTATGCGGAGGGCAGAAAGAAAATTGCAGCTGAGCCTCAATGTTACAGGTGATAATATTCTAGAACATGAAGATAAAAAATTATCTGCAGTTGGAGCTGGCGACTTGAAATCCATCATAGTTGGGTTACATATGTTTGATCCCAATGAGATCAATGATGGAAAAGACAAGGGCGTCGACTTACCAGGAATTAATGCAATGGCTGACAAGGTGATTGCTATGCGTAATGAACAATTATCTGACAAGGACAACAGGAAATTTGAGGTTAATCCAAGAAACATTTTAAAAGGATATGATGTCAAGGAAGGAGGTTCTGCCTCTCTCTCTTGTGATCTTGGTCTTGATGAGGCTTCATATCTTTCTTGGGTTAACAAATTTGAGGAAATTTCTAAATCAAGTTGCGACTCAATCATGGACTTGAGAAGCAGAAGGAACTTAGATGAGGAAAAAAGTAAAAAACTTGAGACTGCAAAGAAGAAGGCAGAAGAAAAGAAGTTGTCTAAGTGGAATGCTCTCGGATACCATTCATTAAATGTGGAAGACCCTATTAGCCCACCAGATGGGGAAATCATATTAGATGCTGGTTCCGTTCATTTTGTATACGGAGATTGTACAGCTCCGGCAAACATTTCTTCATCTGAACCTGCTATAATCTTCAGCTGCATTGATACCTCTGGACGTTGGGGTCATGGTGGAATGTTTGATGCACTGACGAAACTTTCGTCAAGCATTAGTGATGCATATGAACGGGCTTCTGAACACGGGGATCTGCATCTTGGTGATCTCCATCTTATAAAGCTGGAAGATGACTGTGATGATCAAAATTTGGATGACAATGCTTCCAAAATGGTTGCTTTAGCCGTTGTTCAATCGTACAATCCAAGGCGTAAAGTCCCTCGAAGTGAAATCTCACTTGTCAACTTGGAAAGCTGTTTATCAAAGGCAGCATTTTCAGCCGCTCAAAATTCTGCATCAATACACATGCCACGGATTGGTTATCAAGATGGATCTGATCGTTCTCAATGGTACACCATAGAACGACTTCTAAGAAAATATGCATCCATTTACAACATAAATATATACGTATATTATTATCGAAGATCACGTTAA 2622 0.41 MNLTYEQRLQVAAKLILDDDTRAGDAPPSEEELGIKATLKPHQVEGVSWLVRRYKLGVNVMGLGKTLQAISFLSYLKVRQLSLGPFLVLCPLSVTDGWVSEIIKYAPKLEVFKYVGDKECRRSLRMKTHEYVTRHSTHDVVLPFDLLLTSYDIALMDKDFLSQIPWQYAIIDEAQRLKNPSSVLFNVLKDRYVMPRRLLLTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFRDISDLTSGHDSPKVKERLQILRSVLAAFMLRRTKSKLMESGSLVLPSLTETTVLVPLVSLQKKVYMSILRKELPKLVALSSGTSNHQSLQNTVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHHYGHRVLLFAQMTHTLDILQDYLELRKYSYERLDGSIRAEERFAAIRSFSNPSSNMGLNFEADQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEHTVEEVIMRRAERKLQLSLNVTGDNILEHEDKKLSAVGAGDLKSIIVGLHMFDPNEINDGKDKGVDLPGINAMADKVIAMRNEQLSDKDNRKFEVNPRNILKGYDVKEGGSASLSCDLGLDEASYLSWVNKFEEISKSSCDSIMDLRSRRNLDEEKSKKLETAKKKAEEKKLSKWNALGYHSLNVEDPISPPDGEIILDAGSVHFVYGDCTAPANISSSEPAIIFSCIDTSGRWGHGGMFDALTKLSSSISDAYERASEHGDLHLGDLHLIKLEDDCDDQNLDDNASKMVALAVVQSYNPRRKVPRSEISLVNLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSQWYTIERLLRKYASIYNINIYVYYYRRSR 873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00872 873 Gene3D - 281 562 IPR027417 -
Car03g00872 873 CDD Macro_Poa1p-like_SNF2 700 858 - -
Car03g00872 873 Pfam Helicase conserved C-terminal domain 361 485 IPR001650 -
Car03g00872 873 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 222 IPR014001 -
Car03g00872 873 SUPERFAMILY Macro domain-like 701 868 IPR043472 -
Car03g00872 873 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 868 - -
Car03g00872 873 Pfam SNF2-related domain 61 340 IPR000330 GO:0005524|GO:0140658
Car03g00872 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 29 267 IPR027417 -
Car03g00872 873 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 529 IPR027417 -
Car03g00872 873 Coils Coil 648 668 - -
Car03g00872 873 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 364 532 IPR001650 -
Car03g00872 873 SMART helicmild6 390 485 IPR001650 -
Car03g00872 873 SMART ultradead3 35 230 IPR014001 -
Car03g00872 873 Gene3D Leucine Aminopeptidase, subunit E, domain 1 700 873 IPR043472 -
Car03g00872 873 PANTHER HELICASE CHR10-RELATED 4 868 - -
Car03g00872 873 CDD SF2_C_SNF 353 496 - -
Car03g00872 873 Gene3D - 17 280 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00872 Car-Chr3 46717113 46741796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00872 359 515 RAD5 or RAD16-like Gene Family AT5G22750 34.395 3.81e-20 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Car03g00872 SNF2_N 6.4e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00872 K20092 - gmx:100797182 1340.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00872 03 46717113 46741796 Car03g00872 03 46717113 46741796 ECH