Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00862 ATGGCACGCTTCTCAAGGTCCTCCGCGCAGCGTCTTCTATACGCACTCTCCTCCTCCTCTTCCACGGTCTCTCCATCGCCGGCGGGATCCCTAATCGGAGGCGCCTTCCATTTTCGACAATTCTCGGCGGGGAACGTGGCGCGAGCGAAGGCGGCGGCAGACGACAAGGAGCCGTGGTGGAAGGAATCAATGGAACGGCAACGCAATATCGGGATCTCGGCGCACATCGACTCCGGGAAGACGACGTTGACGGAGCGGGTACTGTTTTACACTGGTCGGATTCATGAGATTCATGAGGTGAGGGGAAAGGATGGCGTTGGTGCTAAGATGGATTCCATGGATTTGGAGAGAGAGAAGGGAATCACTATTCAATCTGCTGCTACTTATTGTACTTGGAAAGACTATAAGGTCAACATAATTGACACTCCCGGTCACGTTGATTTCACCATTGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTTCTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCAATTACTGTTGATCGGCAAATGAGAAGATACGAGGTTCCAAGACTTGCATTTATAAACAAGCTTGATCGGATGGGAGCTGATCCATGGAAAGTTTTAAATCAGGCTAGATCTAAGCTTCGGCATCATAGTGCTGCAATTCAAGTTCCGATAGGCTTGGAAGAGAACTTTAAGGGACTCATTGATCTTGTGAAGTTAAAGGCCTATTATTTTCATGGCTCAAGTGGCGAAAAAATTGTCATTGAAGAAGTGCCTTCAGATATGGAAGCCTTGGTGGCAGAAAAAAGACGTGAACTCATAGAGACTGTGTCAGAGGTTGATGATATACTTGCTGAAGCTTTTCTTAGTGATGAGCCCATTTCAGCTGCTGATCTAGAGGGAGCAATTCGCAGGGCTACCATAGCACAGAAATTTATACCAGTATTCATGGGCAGTGCTTTCAAAAACAAGGGGGTACAGCCACTTCTGGATGGTGTACTTAGTTATTTGCCATGTCCAATGGAAGTTAGTAGTTATGCTCTCGACCAATCTAAGAATGAGGAGAAGGTTGAGCTATCTGGAAGTCCTGATGGGCCACTTGTAGCATTGGCTTTCAAGTTAGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAGAATTTACGAGGGTATCATTCGGAAGGGTGATTTTATTATTAATGTTAACACTGGCAAGAAGATCAAGGTTCCTCGTTTGGTTCGGATGCATTCTGATGAGATGGAGGACATTCAAGAGGCCCATGCTGGCCAAATAGTTGCTGTATTTGGTGTTGATTGTGCATCAGGTGATACTTTTACCGATGGGTCAGTTAAATACACCATGACTTCTATGAATGTTCCTGAGCCAGTGATGTCATTAGCTGTACAGCCAGTCTCAAAGGATTCTGGAGGGCAATTTTCAAAAGCTTTGAACCGCTTCCAAAAAGAGGATCCTACTTTCCGTGTTGGCTTGGATCCAGAGAGTGGGCAGACAATTATTTCTGGAATGGGGGAACTGCACTTAGATATCTATGTTGAACGTATTAGGAGGGAGTACAAGGTTGATGCTTCAGTTGGAAAGCCCCGTGTAAACTTCAGAGAAACTGTTACTCAACGTGCTGATTTTGATTATTTACATAAGAAGCAAACAGGAGGACAAGGACAATATGGACGGTCAGCAACTAAGTTTGAATTTGAAAACATGCTTGTTGGTCAGGCTATTCCATCAAATTTTATCCCTGCAATTGAGAAAGGTTTTAAAGAAGCTGCCAACTCTGGGGCATTAATTGGGCATCCAGTTGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCTCATGCTGTTGATTCCAGTGAACTTGCCTTTAAGTTGGCTTCTATCTATGCTTTTAGACAGTGTTACCCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCCGGTGACCTCAACAAGAGAAAAGGGGTGATTGTTGGCAATGATCAGGAAGGAGATGATTCCGTAATTACAGCTCATGTCCCTCTTAACAATATGTTTGGATATTCTACAGCTCTTCGTTCGATGACACAGGGAAAGGGTGAGTTCACAATGGAATATAAGGAACATTCACCTGTTTCTCATGATGTACAGACCCAATTGATAAACACATGCAAGGGCAATAAGGCAGCTGAATGA 2238 0.4473 MARFSRSSAQRLLYALSSSSSTVSPSPAGSLIGGAFHFRQFSAGNVARAKAAADDKEPWWKESMERQRNIGISAHIDSGKTTLTERVLFYTGRIHEIHEVRGKDGVGAKMDSMDLEREKGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAIQVPIGLEENFKGLIDLVKLKAYYFHGSSGEKIVIEEVPSDMEALVAEKRRELIETVSEVDDILAEAFLSDEPISAADLEGAIRRATIAQKFIPVFMGSAFKNKGVQPLLDGVLSYLPCPMEVSSYALDQSKNEEKVELSGSPDGPLVALAFKLEEGRFGQLTYLRIYEGIIRKGDFIINVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVKYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRADFDYLHKKQTGGQGQYGRSATKFEFENMLVGQAIPSNFIPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKLASIYAFRQCYPASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGVIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTCKGNKAAE 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00862 745 Pfam Elongation factor Tu GTP binding domain 66 339 IPR000795 GO:0003924|GO:0005525
Car03g00862 745 Pfam Elongation factor Tu domain 2 381 447 IPR004161 GO:0005525
Car03g00862 745 CDD EFG_mtEFG1_IV 539 643 IPR005517 GO:0005525
Car03g00862 745 SUPERFAMILY EF-G C-terminal domain-like 650 737 IPR035647 -
Car03g00862 745 CDD mtEFG1_II_like 368 448 - -
Car03g00862 745 SUPERFAMILY EF-G C-terminal domain-like 458 535 IPR035647 -
Car03g00862 745 Gene3D - 60 345 IPR027417 -
Car03g00862 745 Pfam Elongation factor G C-terminus 648 733 IPR000640 -
Car03g00862 745 Pfam Elongation factor G, domain IV 535 643 IPR005517 GO:0005525
Car03g00862 745 CDD EFG_III 461 536 IPR009022 -
Car03g00862 745 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 745 IPR045044 -
Car03g00862 745 Pfam Elongation Factor G, domain III 460 534 IPR041095 -
Car03g00862 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 64 339 IPR027417 -
Car03g00862 745 SUPERFAMILY Translation proteins 306 458 IPR009000 -
Car03g00862 745 TIGRFAM EF-G: translation elongation factor G 63 739 IPR004540 GO:0003746|GO:0005525|GO:0006414
Car03g00862 745 Gene3D Translation factors 349 466 - -
Car03g00862 745 Gene3D Elongation Factor G (Translational Gtpase), domain 3 467 540 - -
Car03g00862 745 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 111 126 IPR031157 -
Car03g00862 745 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 745 - -
Car03g00862 745 SUPERFAMILY Ribosomal protein S5 domain 2-like 535 646 IPR020568 -
Car03g00862 745 Hamap Elongation factor G [fusA]. 63 738 IPR004540 GO:0003746|GO:0005525|GO:0006414
Car03g00862 745 CDD EF-G 69 341 - -
Car03g00862 745 SMART EFG_IV_2 536 645 IPR005517 GO:0005525
Car03g00862 745 Gene3D - 651 721 - -
Car03g00862 745 PRINTS GTP-binding elongation factor signature 138 148 IPR000795 GO:0003924|GO:0005525
Car03g00862 745 PRINTS GTP-binding elongation factor signature 118 126 IPR000795 GO:0003924|GO:0005525
Car03g00862 745 PRINTS GTP-binding elongation factor signature 190 199 IPR000795 GO:0003924|GO:0005525
Car03g00862 745 PRINTS GTP-binding elongation factor signature 69 82 IPR000795 GO:0003924|GO:0005525
Car03g00862 745 PRINTS GTP-binding elongation factor signature 154 165 IPR000795 GO:0003924|GO:0005525
Car03g00862 745 TIGRFAM small_GTP: small GTP-binding protein domain 66 240 IPR005225 GO:0005525
Car03g00862 745 SMART EFG_C_a 647 734 IPR000640 -
Car03g00862 745 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 65 343 IPR000795 GO:0003924|GO:0005525
Car03g00862 745 CDD mtEFG1_C 650 727 IPR035649 -
Car03g00862 745 Gene3D - 541 735 IPR014721 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00862 Car-Chr3 46445425 46459715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00862 383 543 Eukaryotic Initiation Factors Gene Family AT3G22980 24.157 8.04e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00862 K02355 - gmx:100796646 1335.86