Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00860 ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAATAATGTTACTAACGGTAACAGTAACAGTAACGGTTTTACTTGGGTTAGTACATGGGACACAACCAACACTTTTCACGTTACGGCGGAAAACTCCGCCGTCAACCGTCAAGAAGGCGGTTTAGCCAACGCGCTCATGTTTGTCCCTCATAACGCTGTAGGCGGACGACAGTATCGTAGCAACTACGCAGAAGCGTACGGCGGCAGAGATTTGTCAAATTCTCACGTGCAGTTGGACCCACATCTCACGTGCTTGAAGTTAGGGAAGAGGCATTATTTTGAGGACGCGAGTggcggcggtggcggtggagggttggtggtgtcggATAAGAGAGGGAAAGGAGGGTACTGTAGTGGTGGGAAGACGTCGGCGGCGTTAGGGGTGGGGAGTTCGGTGGCAAGGTGTCAAGTGGAAGGGTGCCACGTGGCATTGATGAACGCGAAGGAGTATCATAAGAGACATAAAGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGTTGGGTTTAGAGCAGAGATTCTGTCAGCAGTGTAGCAGGTTCCATGTTGTGTCCGAGTTCGATGATTCAAAGAGGAGTTGTAGGAGGAGACTGGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCTAGGAATTCCCAACAAGGCGAGTGTGCTCTCTCTCTTCTGTCATCTAGGACTGATTCATGGCTTTCTCCTGCTGATCTCTCCATAAGATGCAGTGCTGCATTAAGCGAATTGATAGCGGAAAACCGAGCAGCCATAATGGCTAGGCAATATGTCCCAGAAAGAGATTGGCATGTTCAGCACCATTCAGTGGAAGACTACAAAGAAATCCAACAGGAATCCAATTATTTCCCACAACAGATGTTTCCCCAGACACATTAG 948 0.4599 MDFGGNMFCLNNRDQNNVTNGNSNSNGFTWVSTWDTTNTFHVTAENSAVNRQEGGLANALMFVPHNAVGGRQYRSNYAEAYGGRDLSNSHVQLDPHLTCLKLGKRHYFEDASGGGGGGGLVVSDKRGKGGYCSGGKTSAALGVGSSVARCQVEGCHVALMNAKEYHKRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSQQGECALSLLSSRTDSWLSPADLSIRCSAALSELIAENRAAIMARQYVPERDWHVQHHSVEDYKEIQQESNYFPQQMFPQTH 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00860 315 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 25 315 IPR044817 GO:0003677
Car03g00860 315 ProSiteProfiles Zinc finger SBP-type profile. 147 224 IPR004333 GO:0003677
Car03g00860 315 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 25 315 - -
Car03g00860 315 Gene3D - 142 211 IPR036893 GO:0003677|GO:0005634
Car03g00860 315 SUPERFAMILY SBT domain 148 229 IPR036893 GO:0003677|GO:0005634
Car03g00860 315 Pfam SBP domain 150 223 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00860 Car-Chr3 46399647 46403131 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00860 99 223 SBP-box Gene Family AT1G27370 54.400 7.13e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Car03g00860 SBP 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00860 - - cam:101496293 640.958