Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00856 ATGAGCCAGTGTGTTCCTAGTTGGGATGTTGAAGAAAATCCAGAACCACCAAGAGTCACTCTTCGTTCCAACTCTAATTCAACTAACCCTGATGTTCCCATGTTAGACTATGATGTTGCGGAACTAACATGGGAAAATGGACAAATTTCGATGCATGGCTTAGGGTTACCGAGAGTTCCGGTTAAACACTCAACAAACGCAGCTACCACTCCTAACAAAGATACATGGGAGAAGCCTCGTGCTAGTGGCACGTTGGAGTCCATAGTGAACCAAGCGACTACCATACCACACCGCGGAAAATCACCATTTTTCGCCGGTGGTGGTATGTATGGTAACGTGTTAGTCCCATGGCTTGACCCTCAAAGGGCCGCAGCCATATCTGCAACAACCAACGGTATGACTATGGATGCGTTGGTGCCATGCTCCAATCCCACAAAGGAGCAGAGAATCCAAACAATGGATTCAATCTCCAGAGTAGGGATTGGAACGTATATGGTTGGTGGTCCCACACCAGTGGGGTCTTGTAGCGCTGCCCCCGCCGCAACGCAGGAAGAAGGGGCCCTGGTTGTTGCGGCTGCGGTAAAGCGTGGAAGGGTAGCGCATGTagtggggagtgggaggggtcagagtgtgagtggtagtgggaCGTTTGGGAGACAAAGTGAACAAGTGACACTAGACACGTACGAGAGGGAATTTGGTATGGGTGGTTTTACTTCGACTTCAATAGCGTCTTTGGATAACACTAGCTCCGAAAAACAGTGCACAAAGACCACCGTTGACGACCATGATTCTGTTTGCCATAGTAGACCAACGATGGAGGATGCTGACGTGGATGCTAAAAAAAGAGAAAATCGAAAATCATCCGTTTCCACTAAAAGGAGCAGAGCTGCAGCTATACACAATCAATCTGAAAGAAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAATAAGACTGATAAAGCTTCAATGTTGGATGAGGTGATAGAATATCTGAAAAATTTGCAAGCACAAGTGCAAATAGTGAATAGATTCAACATGTCGTCGATGATGATGCCAATGAACATGCAGCAACAACTTCAAATGTCGATCATGAATCAaatgggtatgggaatggggatgggaatgactgggatgcctatgggtataggaatggggatgggaatggATATGAATACCATGAATCGAGCTAATATACCTAACATACCTGGAatgcctcctgtccttcacccttctgcattcatgcctatggcttcatgGGATGTAGGCGGCAGCTGCGACCGGCTTCAAGGGCCTCCGGGAGCCACCGGGATGACTGACCCACTCTCCACACTTCTTGGATGCCAATCGCAGCCCATGAGCATGGACGCCTATAGTAGGATTGCTGCCATGTGTCAGCAGATGCAACAACCTCAAGGTCCGGGTCCTAAGAGCTGA 1467 0.4213 MSQCVPSWDVEENPEPPRVTLRSNSNSTNPDVPMLDYDVAELTWENGQISMHGLGLPRVPVKHSTNAATTPNKDTWEKPRASGTLESIVNQATTIPHRGKSPFFAGGGMYGNVLVPWLDPQRAAAISATTNGMTMDALVPCSNPTKEQRIQTMDSISRVGIGTYMVGGPTPVGSCSAAPAATQEEGALVVAAAVKRGRVAHVVGSGRGQSVSGSGTFGRQSEQVTLDTYEREFGMGGFTSTSIASLDNTSSEKQCTKTTVDDHDSVCHSRPTMEDADVDAKKRENRKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSNKTDKASMLDEVIEYLKNLQAQVQIVNRFNMSSMMMPMNMQQQLQMSIMNQMGMGMGMGMTGMPMGIGMGMGMDMNTMNRANIPNIPGMPPVLHPSAFMPMASWDVGGSCDRLQGPPGATGMTDPLSTLLGCQSQPMSMDAYSRIAAMCQQMQQPQGPGPKS 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00856 488 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 484 IPR031066 -
Car03g00856 488 MobiDBLite consensus disorder prediction 256 286 - -
Car03g00856 488 CDD bHLH_AtPIF_like 296 351 - -
Car03g00856 488 Coils Coil 302 322 - -
Car03g00856 488 MobiDBLite consensus disorder prediction 248 309 - -
Car03g00856 488 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 294 358 IPR036638 GO:0046983
Car03g00856 488 Pfam Helix-loop-helix DNA-binding domain 301 346 IPR011598 GO:0046983
Car03g00856 488 Gene3D - 291 356 IPR036638 GO:0046983
Car03g00856 488 SMART finulus 302 351 IPR011598 GO:0046983
Car03g00856 488 MobiDBLite consensus disorder prediction 1 32 - -
Car03g00856 488 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 296 345 IPR011598 GO:0046983
Car03g00856 488 PANTHER TRANSCRIPTION FACTOR UNE10 1 484 - -
Car03g00856 488 MobiDBLite consensus disorder prediction 18 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00856 Car-Chr3 45962723 45969701 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00856 1 469 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 44.958 1.29e-92 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Car03g00856 HLH 3.4e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00856 - - ahf:112697399 556.214