Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00850 ATGACTTATACACTTGGACGTGCATTCTCTCATATTCTCATCCTTATAGGTTCACTCTTAATATTTCTAGTGACCCCTTCCTCTTGTTTCAATCCAAGGAAGCTTGTTAATGTTTCTTCATACTCCTCATCTGATTCAGATTGGTCACCTTCAATGGCCACTTGGTATGGACCTCCCAACGGTGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAATGCTGTTGGGCAACCACCATTCTCTTCAATGATATCCGCCGGAAGCCCTCTCATCTATGACTCGGGTAAAGGCTGTGGTTCATGCTATGAGGTGAAGTGCACAGGAAATTATGCCTGCTCTGGAAATCCTGTAAATGTAGTTATCACTGATGAGTGTGGTGGCTGTGGCTCAGATGCCCAATATCATTTTGATATGAGTGGTAGTGCTTTTGGTTCCATGGCAATTTCAGGTCAAGATGAAGAGCTACGAAACGCTGGGAAAATAGTCATTGAACATAGAAGAGTAGAATGCAACTACCCTGGTATGTCATTAGCTTTCAATGTGGACTCTGGATCCAACCAAGAATATTTTGCTACCATGATTAAATATGAGAATGGGGATGGTGATCTTGACAAAGTTGAAATCCAGGAAGGAATTGACTCATCCTCTTGGGATACAATGCAACAATCATGGGGTGCTGTTTGGAAATTTGATAAAGGGTCACCACTTAGAGCACCATTTTCTATTAGGCTAACCACACTTAAGTCTGGGAAGACAGTTGTGGCAAAGAATGTGATCCCTGCAGGTTGGAAGCCTGGTCACACTTATAGATCAATTGTGAATTTCTAA 828 0.4239 MTYTLGRAFSHILILIGSLLIFLVTPSSCFNPRKLVNVSSYSSSDSDWSPSMATWYGPPNGDGSEGGACGYGNAVGQPPFSSMISAGSPLIYDSGKGCGSCYEVKCTGNYACSGNPVNVVITDECGGCGSDAQYHFDMSGSAFGSMAISGQDEELRNAGKIVIEHRRVECNYPGMSLAFNVDSGSNQEYFATMIKYENGDGDLDKVEIQEGIDSSSWDTMQQSWGAVWKFDKGSPLRAPFSIRLTTLKSGKTVVAKNVIPAGWKPGHTYRSIVNF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00850 275 SUPERFAMILY PHL pollen allergen 177 271 IPR036749 -
Car03g00850 275 Gene3D - 171 272 IPR036749 -
Car03g00850 275 PANTHER EXPANSIN-B3 20 275 - -
Car03g00850 275 PRINTS Expansin/Lol pI family signature 47 62 IPR007118 GO:0005576
Car03g00850 275 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Car03g00850 275 PRINTS Expansin/Lol pI family signature 88 106 IPR007118 GO:0005576
Car03g00850 275 PRINTS Expansin/Lol pI family signature 158 174 IPR007118 GO:0005576
Car03g00850 275 PRINTS Expansin/Lol pI family signature 217 231 IPR007118 GO:0005576
Car03g00850 275 PRINTS Expansin/Lol pI family signature 257 271 IPR007118 GO:0005576
Car03g00850 275 Pfam Lytic transglycolase 85 161 IPR009009 -
Car03g00850 275 PRINTS Major pollen allergen Lol pI signature 86 97 IPR005795 GO:0005576|GO:0019953
Car03g00850 275 PRINTS Major pollen allergen Lol pI signature 106 116 IPR005795 GO:0005576|GO:0019953
Car03g00850 275 PRINTS Major pollen allergen Lol pI signature 147 162 IPR005795 GO:0005576|GO:0019953
Car03g00850 275 PRINTS Major pollen allergen Lol pI signature 179 194 IPR005795 GO:0005576|GO:0019953
Car03g00850 275 PRINTS Major pollen allergen Lol pI signature 195 210 IPR005795 GO:0005576|GO:0019953
Car03g00850 275 PRINTS Major pollen allergen Lol pI signature 226 243 IPR005795 GO:0005576|GO:0019953
Car03g00850 275 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 66 175 IPR007112 -
Car03g00850 275 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 188 271 IPR007117 -
Car03g00850 275 PANTHER EXPANSIN-B2-RELATED 20 275 - -
Car03g00850 275 Pfam Expansin C-terminal domain 178 260 IPR007117 -
Car03g00850 275 Gene3D - 32 170 IPR036908 -
Car03g00850 275 SUPERFAMILY Barwin-like endoglucanases 37 174 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00850 Car-Chr3 45253451 45256015 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00850 27 275 Expansin Gene Family AT1G65680 60.241 1.75e-114 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00850 - - gmx:548090 468.003