Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00845 ATGGCTCATACACTTAAATGTGCATTCTCTCATATACTCATCCTTGTAGGTTCACTCTCAATATTACTAGTGACCCCTTCCTCTTGTTTTAGTCCCAACAAAGTTGTTAATGTTACTTCATCTAATTCTAATTGGTCACCTTCAGTGGCCACTTGGTATGGACCTCCCACCGGAGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAATGCTGTTGGACAACCTCCATTATCTTCAATGATATCAGCCGGAAGCCCTCTCATCTATCAATCGGGCAAAGGCTGTGGTTCTTGTTATGAGTGCATTGGAAATCCTGCATGTTCAGGAAATCCTGTGACAGTTACTATTACCGATGAGTGTCCTGGTACTTGTGGATCAGATTCTCCATATCATTTTGATTTGAGTGGTAGAGCTTTTGGTGCCATGGCAAATTCAGGTCAAGATGGAAATCTTCGCAAGGTTGGAAAAATAGTCGTTCAACATAGAAGAGTTCCATGCATTTACAATGGTGTCTCAATAGCCTTCCACGTCGACTCTAAATCTAACCCATATTATTTTGCTACCGCGGTTGAATATGAAAATGGGGATGGTGATCTTAAAAAAGTTGAACTTATGGAAGCATTTGGCAACACTTGGGTTACAATGCAACAATCATATGGTGCTGTTTGGAAATATAATAAACAGTCACTACTAAGAGCGCCATTTTCTATTAGGCTAACCACAATTGAGTCTGGGAAGATATTTGTAGCAAAGAATGTGATCCCGGCGGGTTGGAAGCCTGGTCAGACTTATAGAGCACTTGGAAATTTTATTTAA 816 0.4081 MAHTLKCAFSHILILVGSLSILLVTPSSCFSPNKVVNVTSSNSNWSPSVATWYGPPTGDGSEGGACGYGNAVGQPPLSSMISAGSPLIYQSGKGCGSCYECIGNPACSGNPVTVTITDECPGTCGSDSPYHFDLSGRAFGAMANSGQDGNLRKVGKIVVQHRRVPCIYNGVSIAFHVDSKSNPYYFATAVEYENGDGDLKKVELMEAFGNTWVTMQQSYGAVWKYNKQSLLRAPFSIRLTTIESGKIFVAKNVIPAGWKPGQTYRALGNFI 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00845 271 PRINTS Expansin/Lol pI family signature 44 59 IPR007118 GO:0005576
Car03g00845 271 PRINTS Expansin/Lol pI family signature 62 80 IPR007118 GO:0005576
Car03g00845 271 PRINTS Expansin/Lol pI family signature 85 103 IPR007118 GO:0005576
Car03g00845 271 PRINTS Expansin/Lol pI family signature 154 170 IPR007118 GO:0005576
Car03g00845 271 PRINTS Expansin/Lol pI family signature 212 226 IPR007118 GO:0005576
Car03g00845 271 PRINTS Expansin/Lol pI family signature 252 266 IPR007118 GO:0005576
Car03g00845 271 PRINTS Major pollen allergen Lol pI signature 83 94 IPR005795 GO:0005576|GO:0019953
Car03g00845 271 PRINTS Major pollen allergen Lol pI signature 121 136 IPR005795 GO:0005576|GO:0019953
Car03g00845 271 PRINTS Major pollen allergen Lol pI signature 143 158 IPR005795 GO:0005576|GO:0019953
Car03g00845 271 PRINTS Major pollen allergen Lol pI signature 175 190 IPR005795 GO:0005576|GO:0019953
Car03g00845 271 PRINTS Major pollen allergen Lol pI signature 191 206 IPR005795 GO:0005576|GO:0019953
Car03g00845 271 PRINTS Major pollen allergen Lol pI signature 242 259 IPR005795 GO:0005576|GO:0019953
Car03g00845 271 SUPERFAMILY PHL pollen allergen 173 265 IPR036749 -
Car03g00845 271 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 63 171 IPR007112 -
Car03g00845 271 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 184 266 IPR007117 -
Car03g00845 271 PANTHER EXPANSIN-B3 19 270 - -
Car03g00845 271 Pfam Lytic transglycolase 82 149 IPR009009 -
Car03g00845 271 PANTHER EXPANSIN-B2-RELATED 19 270 - -
Car03g00845 271 Gene3D - 168 270 IPR036749 -
Car03g00845 271 SUPERFAMILY Barwin-like endoglucanases 38 170 IPR036908 -
Car03g00845 271 Gene3D - 29 166 IPR036908 -
Car03g00845 271 Pfam Expansin C-terminal domain 173 255 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00845 Car-Chr3 45055360 45057026 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00845 29 270 Expansin Gene Family AT1G65680 55.870 1.23e-93 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00845 - - gmx:548090 378.252
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00845 03 45055360 45057026 Car03g00845 03 45055360 45057026 ECH