Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00844 ATGGCTCATACACTTAAATGTGCATTCTCTCATATACTCATCCTTGTAGGTGGTGCTTGTGGATATGGAAAAGCTGTTGGACAACCTCCATCATCTTCAATGATATCAGCCGGAAGCCCTCTCATCTATCAATCGGGCAAAGGCTGTGGTTCTTGTTATGAGTCACTACTAAGAGCACCATTTTCTATTAGGCTAACCACAATTGAGTTTGGGAAGATATTTGTAGCAAAGAATGTGATCCCGGCGGGTTGGAAGCCTGGTTAG 264 0.4356 MAHTLKCAFSHILILVGGACGYGKAVGQPPSSSMISAGSPLIYQSGKGCGSCYESLLRAPFSIRLTTIEFGKIFVAKNVIPAGWKPG 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00844 87 PRINTS Expansin/Lol pI family signature 16 34 IPR007118 GO:0005576
Car03g00844 87 PRINTS Expansin/Lol pI family signature 39 57 IPR007118 GO:0005576
Car03g00844 87 SUPERFAMILY Barwin-like endoglucanases 16 54 IPR036908 -
Car03g00844 87 PANTHER EXPANSIN-B14-RELATED 17 54 - -
Car03g00844 87 PANTHER EXPANSIN-B14-RELATED 56 87 - -
Car03g00844 87 SUPERFAMILY PHL pollen allergen 54 87 IPR036749 -
Car03g00844 87 PANTHER EXPANSIN-B3 17 54 - -
Car03g00844 87 PANTHER EXPANSIN-B3 56 87 - -
Car03g00844 87 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 17 87 IPR007112 -
Car03g00844 87 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 20 - -
Car03g00844 87 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 57 87 IPR007117 -
Car03g00844 87 Gene3D - 4 73 IPR036908 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00844 Car-Chr3 45025992 45026799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00844 57 87 Expansin Gene Family AT1G65680 64.516 7.20e-09 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00844 - - cam:101502552 90.5077