Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00843 ATGTGCATTCTCTCAATATTACTAGTGACCCCTTCCTCTTGTTTTAGTCCCAACAAAGTTGTTAATGTTACTTCATCTAATTCTAATTGGTCACCTTCAGTGGCCACTTGGTATGGACCTCCCACCGGAGATGGAAGTGAAGGTGGTGCTTGTGGATATGGAAATGCTGTTGGACAACCTCCATTATCTTCAATGATATCAGCCGGAAGCCCTCTCATCTATCAATCGGGCGAAGGCTGTGGTTCTTGTTATGAGGTGAAATGCATTGGAAATCCTGCATGTTTAGGAAATCCTGTGACAGTTACTATTACCGATGAGTGTCTTGGTACTTGTGGATCAGATTCTCCATATCATTTTGATTTGAGTGAGGTTTTTTTAGGATTTTATTTATGTGTCATTTTTAATGTTCTAAGAGTTCCATGCATTTACAATGGTGTCTCAATAGCCTTCCACGTCGACTCTAAATCTAACCCATATTATTTTGCTACCGCGGTTGAATATGAAAATGGGGATGGTGATCTTAAAAAAGTTGAACTTATGGAAGCATTTGGCAACACTTGGGTTACAATGCAACAATCATACGGTGCTGTTTGGAAATATAATAAACAGCCACTACTAAGAGCGCCATTTTCTATTAGGCTAACCACAATTGAGTCTGGGAAGATATCTGTAGCAAAGAATGTGATCCCGACGGGTTGGAAGCCTGGTCAGACTTATAGAGCACTTGGAAATTTTATTTAA 741 0.3981 MCILSILLVTPSSCFSPNKVVNVTSSNSNWSPSVATWYGPPTGDGSEGGACGYGNAVGQPPLSSMISAGSPLIYQSGEGCGSCYEVKCIGNPACLGNPVTVTITDECLGTCGSDSPYHFDLSEVFLGFYLCVIFNVLRVPCIYNGVSIAFHVDSKSNPYYFATAVEYENGDGDLKKVELMEAFGNTWVTMQQSYGAVWKYNKQPLLRAPFSIRLTTIESGKISVAKNVIPTGWKPGQTYRALGNFI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00843 246 Pfam Expansin C-terminal domain 148 230 IPR007117 -
Car03g00843 246 PRINTS Expansin/Lol pI family signature 47 65 IPR007118 GO:0005576
Car03g00843 246 PRINTS Expansin/Lol pI family signature 29 44 IPR007118 GO:0005576
Car03g00843 246 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Car03g00843 246 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Car03g00843 246 PRINTS Expansin/Lol pI family signature 227 241 IPR007118 GO:0005576
Car03g00843 246 Gene3D - 145 243 IPR036749 -
Car03g00843 246 PANTHER EXPANSIN-B2-RELATED 7 245 - -
Car03g00843 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 159 241 IPR007117 -
Car03g00843 246 PANTHER EXPANSIN-B3 7 245 - -
Car03g00843 246 Gene3D - 14 128 IPR036908 -
Car03g00843 246 Pfam Lytic transglycolase 67 123 IPR009009 -
Car03g00843 246 SUPERFAMILY Barwin-like endoglucanases 23 123 IPR036908 -
Car03g00843 246 PRINTS Major pollen allergen Lol pI signature 217 234 IPR005795 GO:0005576|GO:0019953
Car03g00843 246 PRINTS Major pollen allergen Lol pI signature 68 79 IPR005795 GO:0005576|GO:0019953
Car03g00843 246 PRINTS Major pollen allergen Lol pI signature 166 181 IPR005795 GO:0005576|GO:0019953
Car03g00843 246 PRINTS Major pollen allergen Lol pI signature 150 165 IPR005795 GO:0005576|GO:0019953
Car03g00843 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 48 146 IPR007112 -
Car03g00843 246 SUPERFAMILY PHL pollen allergen 148 240 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00843 Car-Chr3 45002888 45004515 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00843 3 245 Expansin Gene Family AT2G45110 46.275 1.05e-77 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00843 - - gmx:100805408 320.857