Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00833 ATGGACAAATACAACTGCAAACTTTGCTACAGAAGTTTTAGCAATGGAAGAGCATTGGGAGGTCACATGAGATCTCACATGATGAATTTGATTGTTAATAAACAAGAAGAAAAGTCATCAAGAACAATCCAACTTAGTTTTGAAGCTGAATCAGCACCCTCATCAACGTCAGAAGAAGACAATGATTGCTATGAAAAGGATCTTTGTTATCCAAAGAGAAACATTCCTCATATAAATCAAGATTTTACTATTGATAATGATTCCATTCTTCCAGATAGAGAGAGTGAAACGGAATCGTCAAAGAATAACCCAACTCGTAAAAGATCCAAAAGGCTGTGGAAAATTCGCGGGTTCGATCCAAACTATTATGATGAATCTGTAATGAAAAAAGTGAAGTTTTGTAACAAGACAGAATCTTCGGTTGTTGAATATGAACCCGCTAGTTCCGTTTCAAATGCAACAACAGATGAAGATGTTGCATTTTGTCTAATGTTGTTGTCCAGAGACAAATGGAATAAAGAGGGAGATTACAATgaagaagatgaaattgacgatgaagttgacgaagacccggaagaagaagaggatgaagaagaagaTAAAATTGAAAGATCTTTGGAAGAGAGTGATGAATCTCAAGAGCAAATTAAAGTGATCAAGAATAATAAATTACGTAAAGGAAGGTACAAATGTGAAACATGTAACAAAGTATTTAAATCATATCAAGCGTTGGGTGGTCATAGAGCAAGTCACAAGAAGATTAAATTAATGAACATAAATGTTGAAGAATCACCACCTGAATTTGAAAGTGGAATAGTGGAAAAGAAAATTCACGAATGTCCTGTTTGTTTTCGGGTTTTTTCTTCGGGTCAAGCACTTGGTGGGCACAAAAGAACACATGTTATTCATGGATcatcaacaacaacaacaacaGTTCCAATTTTAAGTTCAACAAAAATTGGAAAAAGTGTCATAGATCTTAATCTTCCTGCTCCAATTGATGATGATGATGTTAGTCAAATCGAGAATTCTGCTGTTTCAGATGCAGAATTTGTCAAAACCCGTTAG 1068 0.3193 MDKYNCKLCYRSFSNGRALGGHMRSHMMNLIVNKQEEKSSRTIQLSFEAESAPSSTSEEDNDCYEKDLCYPKRNIPHINQDFTIDNDSILPDRESETESSKNNPTRKRSKRLWKIRGFDPNYYDESVMKKVKFCNKTESSVVEYEPASSVSNATTDEDVAFCLMLLSRDKWNKEGDYNEEDEIDDEVDEDPEEEEDEEEDKIERSLEESDESQEQIKVIKNNKLRKGRYKCETCNKVFKSYQALGGHRASHKKIKLMNINVEESPPEFESGIVEKKIHECPVCFRVFSSGQALGGHKRTHVIHGSSTTTTTVPILSSTKIGKSVIDLNLPAPIDDDDVSQIENSAVSDAEFVKTR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00833 355 MobiDBLite consensus disorder prediction 87 105 - -
Car03g00833 355 MobiDBLite consensus disorder prediction 178 205 - -
Car03g00833 355 SMART c2h2final6 229 251 IPR013087 -
Car03g00833 355 SMART c2h2final6 4 26 IPR013087 -
Car03g00833 355 SMART c2h2final6 278 300 IPR013087 -
Car03g00833 355 ProSitePatterns Zinc finger C2H2 type domain signature. 231 251 IPR013087 -
Car03g00833 355 MobiDBLite consensus disorder prediction 83 109 - -
Car03g00833 355 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Car03g00833 355 Gene3D Classic Zinc Finger 226 300 - -
Car03g00833 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 278 300 IPR013087 -
Car03g00833 355 Gene3D Classic Zinc Finger 2 64 - -
Car03g00833 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 26 IPR013087 -
Car03g00833 355 Coils Coil 195 222 - -
Car03g00833 355 MobiDBLite consensus disorder prediction 175 214 - -
Car03g00833 355 Pfam C2H2-type zinc finger 4 27 - -
Car03g00833 355 Pfam C2H2-type zinc finger 228 253 - -
Car03g00833 355 Pfam C2H2-type zinc finger 278 300 - -
Car03g00833 355 SUPERFAMILY beta-beta-alpha zinc fingers 3 28 IPR036236 -
Car03g00833 355 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 354 - -
Car03g00833 355 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 354 IPR044303 GO:0006355
Car03g00833 355 ProSitePatterns Zinc finger C2H2 type domain signature. 280 300 IPR013087 -
Car03g00833 355 SUPERFAMILY beta-beta-alpha zinc fingers 228 300 IPR036236 -
Car03g00833 355 ProSiteProfiles Zinc finger C2H2 type domain profile. 229 256 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00833 Car-Chr3 44649511 44651025 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00833 1 341 C2H2 Transcription Factor Family AT3G60580 43.966 9.93e-69 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Car03g00833 zf-C2H2_6 5.5e-12 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00833 - - cam:101509915 646.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car03g00833 03 44649511 44651025 Car03g00833 03 44649511 44651025 ECH
Car03g00833 03 44649511 44651025 Car06g02738 06 37333809 37334957 PCT