Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car03g00733 ATGAATATTTTTAAACAAAAGAAGAAAACAACTGGACGGAAGAAAATTGAGATTAAGAAGCTTGAGAAGGATACAAATAAGCAAGTGACATTCTCAAAAAGAAGATCAGGTTTATTCAAAAAAACAAGCGAACTCTGTATTTTATGCAATGTTGATGCAGCTATCATTGTATTTTCCCCCGCTGATAAACTATTTTGTTTTGGTCAACCCAACACTGACACTATCATCAACAGTTATATCAAAGGAACAACAGAGTTTGAGGCTTCAAAGTCAATAGAAAAATCTATTTTCTATGAAGAGCATAATACAGAATATGAGGAAGCAATCCATAAGTTGGAATTTGAAAAAAAGAAACTTGAAGAATTTGAGAATTTGTCTAAGGTTTGGAAATCAGGAGATTGGTGGAATGACCCAATTGATGAGATGAGTATTGATCAACTTGAACAATTCATGGCCTCTATTTATGAGTTAAGGAGGAAACTAGTTGATAGGGTTGACGATCTTGTCATGATGCTCCCCAGATTGGTGTAG 531 0.3409 MNIFKQKKKTTGRKKIEIKKLEKDTNKQVTFSKRRSGLFKKTSELCILCNVDAAIIVFSPADKLFCFGQPNTDTIINSYIKGTTEFEASKSIEKSIFYEEHNTEYEEAIHKLEFEKKKLEEFENLSKVWKSGDWWNDPIDEMSIDQLEQFMASIYELRRKLVDRVDDLVMMLPRLV 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car03g00733 176 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 21 67 IPR002100 GO:0003677|GO:0046983
Car03g00733 176 PRINTS MADS domain signature 13 33 IPR002100 GO:0003677|GO:0046983
Car03g00733 176 PRINTS MADS domain signature 33 48 IPR002100 GO:0003677|GO:0046983
Car03g00733 176 PRINTS MADS domain signature 48 69 IPR002100 GO:0003677|GO:0046983
Car03g00733 176 SMART madsneu2 11 70 IPR002100 GO:0003677|GO:0046983
Car03g00733 176 PANTHER MADS BOX PROTEIN 8 171 - -
Car03g00733 176 Coils Coil 98 125 - -
Car03g00733 176 Gene3D - 23 126 IPR036879 GO:0003677|GO:0046983
Car03g00733 176 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 8 171 - -
Car03g00733 176 SUPERFAMILY SRF-like 12 84 IPR036879 GO:0003677|GO:0046983
Car03g00733 176 ProSiteProfiles MADS-box domain profile. 11 71 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car03g00733 Car-Chr3 38761851 38762381 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car03g00733 8 159 Type I MADS-box Gene Family AT5G60440 41.250 6.60e-39 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Car03g00733 SRF-TF 5e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car03g00733 - - cam:101502875 328.946